Hb_000030_060

Information

Type -
Description -
Location Contig30: 44501-52508
Sequence    

Annotation

kegg
ID vvi:100257135
description T-complex protein 1 subunit theta
nr
ID XP_012070465.1
description PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
swissprot
ID Q94K05
description T-complex protein 1 subunit theta OS=Arabidopsis thaliana GN=CCT8 PE=1 SV=1
trembl
ID A0A067L6N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02729 PE=3 SV=1
Gene Ontology
ID GO:0005829
description t-complex protein 1 subunit theta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31483: 44535-49363 , PASA_asmbl_31484: 44535-52257 , PASA_asmbl_31485: 44828-45139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_060 0.0 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
2 Hb_000365_030 0.0871155145 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
3 Hb_000286_170 0.0883811919 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
4 Hb_006618_090 0.0970099631 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
5 Hb_010417_060 0.0996762364 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
6 Hb_001307_080 0.1043783787 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
7 Hb_033554_020 0.107441029 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
8 Hb_007558_070 0.1076323634 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
9 Hb_005053_010 0.1080457941 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
10 Hb_000243_130 0.1089827555 - - hypothetical protein M569_10795, partial [Genlisea aurea]
11 Hb_003436_020 0.1089866141 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
12 Hb_002374_320 0.1105576949 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
13 Hb_143629_150 0.1114435984 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
14 Hb_001504_040 0.1117962683 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
15 Hb_067193_010 0.1152770011 - - -
16 Hb_000917_160 0.1155849399 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
17 Hb_025194_020 0.1156814537 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
18 Hb_000406_230 0.1166398876 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
19 Hb_002641_130 0.1170356216 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
20 Hb_000086_150 0.1170477683 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000030_060 Hb_000030_060 Hb_000365_030 Hb_000365_030 Hb_000030_060--Hb_000365_030 Hb_000286_170 Hb_000286_170 Hb_000030_060--Hb_000286_170 Hb_006618_090 Hb_006618_090 Hb_000030_060--Hb_006618_090 Hb_010417_060 Hb_010417_060 Hb_000030_060--Hb_010417_060 Hb_001307_080 Hb_001307_080 Hb_000030_060--Hb_001307_080 Hb_033554_020 Hb_033554_020 Hb_000030_060--Hb_033554_020 Hb_000130_020 Hb_000130_020 Hb_000365_030--Hb_000130_020 Hb_178968_050 Hb_178968_050 Hb_000365_030--Hb_178968_050 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_004109_370 Hb_004109_370 Hb_000365_030--Hb_004109_370 Hb_000635_030 Hb_000635_030 Hb_000365_030--Hb_000635_030 Hb_067193_010 Hb_067193_010 Hb_000286_170--Hb_067193_010 Hb_007558_070 Hb_007558_070 Hb_000286_170--Hb_007558_070 Hb_000286_170--Hb_010417_060 Hb_000406_230 Hb_000406_230 Hb_000286_170--Hb_000406_230 Hb_000062_470 Hb_000062_470 Hb_000286_170--Hb_000062_470 Hb_009771_110 Hb_009771_110 Hb_006618_090--Hb_009771_110 Hb_005053_010 Hb_005053_010 Hb_006618_090--Hb_005053_010 Hb_002686_040 Hb_002686_040 Hb_006618_090--Hb_002686_040 Hb_007929_080 Hb_007929_080 Hb_006618_090--Hb_007929_080 Hb_000523_080 Hb_000523_080 Hb_006618_090--Hb_000523_080 Hb_000261_030 Hb_000261_030 Hb_006618_090--Hb_000261_030 Hb_010417_060--Hb_000062_470 Hb_032920_130 Hb_032920_130 Hb_010417_060--Hb_032920_130 Hb_000917_160 Hb_000917_160 Hb_010417_060--Hb_000917_160 Hb_002044_170 Hb_002044_170 Hb_010417_060--Hb_002044_170 Hb_000191_130 Hb_000191_130 Hb_010417_060--Hb_000191_130 Hb_000176_130 Hb_000176_130 Hb_010417_060--Hb_000176_130 Hb_004429_160 Hb_004429_160 Hb_001307_080--Hb_004429_160 Hb_001307_080--Hb_000191_130 Hb_006658_040 Hb_006658_040 Hb_001307_080--Hb_006658_040 Hb_000010_360 Hb_000010_360 Hb_001307_080--Hb_000010_360 Hb_004209_020 Hb_004209_020 Hb_001307_080--Hb_004209_020 Hb_003040_020 Hb_003040_020 Hb_001307_080--Hb_003040_020 Hb_001373_160 Hb_001373_160 Hb_033554_020--Hb_001373_160 Hb_000243_130 Hb_000243_130 Hb_033554_020--Hb_000243_130 Hb_033554_020--Hb_006618_090 Hb_000102_050 Hb_000102_050 Hb_033554_020--Hb_000102_050 Hb_000994_020 Hb_000994_020 Hb_033554_020--Hb_000994_020 Hb_006501_010 Hb_006501_010 Hb_033554_020--Hb_006501_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0029 26.4991 29.005 21.6732 55.2686 26.8833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.965 8.50646 7.7577 33.5412 22.6637

CAGE analysis