Hb_027380_230

Information

Type -
Description -
Location Contig27380: 232740-237435
Sequence    

Annotation

kegg
ID cit:102628782
description uncharacterized LOC102628782
nr
ID XP_012072181.1
description PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
swissprot
ID Q9C8G5
description CSC1-like protein ERD4 OS=Arabidopsis thaliana GN=ERD4 PE=2 SV=1
trembl
ID A0A067L1N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04662 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein erd4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28619: 232861-237653 , PASA_asmbl_28620: 234970-235537
cDNA
(Sanger)
(ID:Location)		 036_J23.ab1: 232861-234896 , 044_N12.ab1: 232891-234879

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_230 0.0 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
2 Hb_004884_030 0.1193717183 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
3 Hb_008147_050 0.1361294092 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
4 Hb_000206_120 0.1445480356 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
5 Hb_007257_010 0.1563633791 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
6 Hb_000376_060 0.1593770704 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
7 Hb_003376_260 0.1597934696 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
8 Hb_024698_010 0.1721410002 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
9 Hb_097646_010 0.1729272166 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
10 Hb_116420_040 0.1751566476 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004657_090 0.1764485903 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
12 Hb_004738_110 0.1784911287 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
13 Hb_011164_010 0.1786097855 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
14 Hb_000505_110 0.1788003795 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
15 Hb_000347_270 0.179176341 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
16 Hb_132840_100 0.1835687194 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
17 Hb_005048_140 0.1839025469 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004701_050 0.1856759203 - - alpha1 family protein [Populus trichocarpa]
19 Hb_005529_030 0.1882920373 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
20 Hb_000347_560 0.189130787 - - -

Gene co-expression network

sample Hb_027380_230 Hb_027380_230 Hb_004884_030 Hb_004884_030 Hb_027380_230--Hb_004884_030 Hb_008147_050 Hb_008147_050 Hb_027380_230--Hb_008147_050 Hb_000206_120 Hb_000206_120 Hb_027380_230--Hb_000206_120 Hb_007257_010 Hb_007257_010 Hb_027380_230--Hb_007257_010 Hb_000376_060 Hb_000376_060 Hb_027380_230--Hb_000376_060 Hb_003376_260 Hb_003376_260 Hb_027380_230--Hb_003376_260 Hb_000482_150 Hb_000482_150 Hb_004884_030--Hb_000482_150 Hb_167973_010 Hb_167973_010 Hb_004884_030--Hb_167973_010 Hb_004701_050 Hb_004701_050 Hb_004884_030--Hb_004701_050 Hb_006355_020 Hb_006355_020 Hb_004884_030--Hb_006355_020 Hb_004884_030--Hb_000376_060 Hb_011164_010 Hb_011164_010 Hb_008147_050--Hb_011164_010 Hb_000062_030 Hb_000062_030 Hb_008147_050--Hb_000062_030 Hb_000505_110 Hb_000505_110 Hb_008147_050--Hb_000505_110 Hb_008147_050--Hb_000206_120 Hb_008147_050--Hb_004884_030 Hb_102269_010 Hb_102269_010 Hb_000206_120--Hb_102269_010 Hb_010925_020 Hb_010925_020 Hb_000206_120--Hb_010925_020 Hb_007044_230 Hb_007044_230 Hb_000206_120--Hb_007044_230 Hb_000935_090 Hb_000935_090 Hb_000206_120--Hb_000935_090 Hb_132840_100 Hb_132840_100 Hb_000206_120--Hb_132840_100 Hb_004223_290 Hb_004223_290 Hb_000206_120--Hb_004223_290 Hb_010407_190 Hb_010407_190 Hb_007257_010--Hb_010407_190 Hb_006573_010 Hb_006573_010 Hb_007257_010--Hb_006573_010 Hb_020247_050 Hb_020247_050 Hb_007257_010--Hb_020247_050 Hb_007257_010--Hb_008147_050 Hb_001766_040 Hb_001766_040 Hb_007257_010--Hb_001766_040 Hb_000086_150 Hb_000086_150 Hb_000376_060--Hb_000086_150 Hb_007305_020 Hb_007305_020 Hb_000376_060--Hb_007305_020 Hb_011344_020 Hb_011344_020 Hb_000376_060--Hb_011344_020 Hb_000376_060--Hb_004701_050 Hb_041327_020 Hb_041327_020 Hb_000376_060--Hb_041327_020 Hb_098209_010 Hb_098209_010 Hb_000376_060--Hb_098209_010 Hb_024698_010 Hb_024698_010 Hb_003376_260--Hb_024698_010 Hb_074197_020 Hb_074197_020 Hb_003376_260--Hb_074197_020 Hb_116420_040 Hb_116420_040 Hb_003376_260--Hb_116420_040 Hb_002301_310 Hb_002301_310 Hb_003376_260--Hb_002301_310 Hb_005048_140 Hb_005048_140 Hb_003376_260--Hb_005048_140 Hb_004657_090 Hb_004657_090 Hb_003376_260--Hb_004657_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.6863 70.4699 48.6763 64.2581 107.787 102.951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.57419 3.08569 12.7677 12.6585 95.8511

CAGE analysis