Hb_024698_010

Information

Type -
Description -
Location Contig24698: 8763-9929
Sequence    

Annotation

kegg
ID rcu:RCOM_0851740
description ring finger protein, putative
nr
ID XP_012081952.1
description PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
swissprot
ID Q9FL07
description RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1
trembl
ID B9RUC1
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0851740 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ring-h2 finger protein atl46-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25630: 9631-10021 , PASA_asmbl_25631: 10272-10545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024698_010 0.0 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
2 Hb_000056_010 0.100051406 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
3 Hb_003376_260 0.117502098 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
4 Hb_097646_010 0.1178502156 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
5 Hb_003001_040 0.1346822824 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
6 Hb_005048_140 0.1496169816 - - conserved hypothetical protein [Ricinus communis]
7 Hb_116420_040 0.1499715456 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002311_190 0.1617377504 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
9 Hb_000358_200 0.1617954132 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
10 Hb_006422_020 0.1648917457 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
11 Hb_000069_570 0.1658464425 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
12 Hb_000997_100 0.1682690666 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
13 Hb_000608_260 0.1685630575 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
14 Hb_001488_270 0.1695712994 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
15 Hb_004116_180 0.1707256941 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
16 Hb_002471_180 0.1707994021 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_011930_100 0.1710608438 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
18 Hb_004738_030 0.172000625 - - Inactive protein kinase [Gossypium arboreum]
19 Hb_027380_230 0.1721410002 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
20 Hb_100525_010 0.177080898 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]

Gene co-expression network

sample Hb_024698_010 Hb_024698_010 Hb_000056_010 Hb_000056_010 Hb_024698_010--Hb_000056_010 Hb_003376_260 Hb_003376_260 Hb_024698_010--Hb_003376_260 Hb_097646_010 Hb_097646_010 Hb_024698_010--Hb_097646_010 Hb_003001_040 Hb_003001_040 Hb_024698_010--Hb_003001_040 Hb_005048_140 Hb_005048_140 Hb_024698_010--Hb_005048_140 Hb_116420_040 Hb_116420_040 Hb_024698_010--Hb_116420_040 Hb_000056_010--Hb_097646_010 Hb_000056_010--Hb_003001_040 Hb_000579_030 Hb_000579_030 Hb_000056_010--Hb_000579_030 Hb_006422_020 Hb_006422_020 Hb_000056_010--Hb_006422_020 Hb_004116_180 Hb_004116_180 Hb_000056_010--Hb_004116_180 Hb_074197_020 Hb_074197_020 Hb_003376_260--Hb_074197_020 Hb_003376_260--Hb_116420_040 Hb_002301_310 Hb_002301_310 Hb_003376_260--Hb_002301_310 Hb_003376_260--Hb_005048_140 Hb_004657_090 Hb_004657_090 Hb_003376_260--Hb_004657_090 Hb_100525_010 Hb_100525_010 Hb_097646_010--Hb_100525_010 Hb_097646_010--Hb_003001_040 Hb_097646_010--Hb_003376_260 Hb_027380_230 Hb_027380_230 Hb_097646_010--Hb_027380_230 Hb_020805_100 Hb_020805_100 Hb_003001_040--Hb_020805_100 Hb_000334_130 Hb_000334_130 Hb_003001_040--Hb_000334_130 Hb_000979_240 Hb_000979_240 Hb_003001_040--Hb_000979_240 Hb_000358_200 Hb_000358_200 Hb_003001_040--Hb_000358_200 Hb_000069_570 Hb_000069_570 Hb_005048_140--Hb_000069_570 Hb_005048_140--Hb_116420_040 Hb_002471_180 Hb_002471_180 Hb_005048_140--Hb_002471_180 Hb_041327_020 Hb_041327_020 Hb_005048_140--Hb_041327_020 Hb_000022_190 Hb_000022_190 Hb_005048_140--Hb_000022_190 Hb_000608_260 Hb_000608_260 Hb_116420_040--Hb_000608_260 Hb_116420_040--Hb_000069_570 Hb_001349_030 Hb_001349_030 Hb_116420_040--Hb_001349_030 Hb_001194_020 Hb_001194_020 Hb_116420_040--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_116420_040--Hb_001059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.64462 12.2001 7.08475 12.7163 6.21093 9.05107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.839016 0.329985 2.94224 1.42839 10.5685

CAGE analysis