Hb_003001_040

Information

Type -
Description -
Location Contig3001: 45256-48149
Sequence    

Annotation

kegg
ID rcu:RCOM_1749870
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_002532733.1
description Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
swissprot
ID Q9LSG3
description Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1
trembl
ID B9T3B4
description Hexosyltransferase OS=Ricinus communis GN=RCOM_1749870 PE=3 SV=1
Gene Ontology
ID GO:0000139
description galacturonosyltransferase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31654: 45278-47907 , PASA_asmbl_31655: 47439-47668
cDNA
(Sanger)
(ID:Location)		 014_H18.ab1: 47365-47900

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_040 0.0 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
2 Hb_020805_100 0.1230418176 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
3 Hb_024698_010 0.1346822824 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
4 Hb_000334_130 0.1351854441 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
5 Hb_097646_010 0.1416738208 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
6 Hb_000979_240 0.1417764552 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
7 Hb_000358_200 0.1435724843 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
8 Hb_000732_070 0.1462105772 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_000751_140 0.1488711678 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
10 Hb_001488_270 0.1493078724 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
11 Hb_006022_010 0.1500571033 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
12 Hb_001454_220 0.1512391433 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
13 Hb_000853_220 0.1513392525 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
14 Hb_001623_110 0.1514817836 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
15 Hb_002311_190 0.1522925596 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
16 Hb_000608_260 0.1529815806 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
17 Hb_186857_010 0.1532075578 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_000139_180 0.1538261725 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
19 Hb_003895_020 0.1544663003 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
20 Hb_116420_040 0.1552775805 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003001_040 Hb_003001_040 Hb_020805_100 Hb_020805_100 Hb_003001_040--Hb_020805_100 Hb_024698_010 Hb_024698_010 Hb_003001_040--Hb_024698_010 Hb_000334_130 Hb_000334_130 Hb_003001_040--Hb_000334_130 Hb_097646_010 Hb_097646_010 Hb_003001_040--Hb_097646_010 Hb_000979_240 Hb_000979_240 Hb_003001_040--Hb_000979_240 Hb_000358_200 Hb_000358_200 Hb_003001_040--Hb_000358_200 Hb_000732_070 Hb_000732_070 Hb_020805_100--Hb_000732_070 Hb_000671_060 Hb_000671_060 Hb_020805_100--Hb_000671_060 Hb_003895_020 Hb_003895_020 Hb_020805_100--Hb_003895_020 Hb_006022_010 Hb_006022_010 Hb_020805_100--Hb_006022_010 Hb_152910_010 Hb_152910_010 Hb_020805_100--Hb_152910_010 Hb_000056_010 Hb_000056_010 Hb_024698_010--Hb_000056_010 Hb_003376_260 Hb_003376_260 Hb_024698_010--Hb_003376_260 Hb_024698_010--Hb_097646_010 Hb_005048_140 Hb_005048_140 Hb_024698_010--Hb_005048_140 Hb_116420_040 Hb_116420_040 Hb_024698_010--Hb_116420_040 Hb_001221_090 Hb_001221_090 Hb_000334_130--Hb_001221_090 Hb_002092_070 Hb_002092_070 Hb_000334_130--Hb_002092_070 Hb_002027_280 Hb_002027_280 Hb_000334_130--Hb_002027_280 Hb_001454_170 Hb_001454_170 Hb_000334_130--Hb_001454_170 Hb_004429_010 Hb_004429_010 Hb_000334_130--Hb_004429_010 Hb_000352_070 Hb_000352_070 Hb_000334_130--Hb_000352_070 Hb_100525_010 Hb_100525_010 Hb_097646_010--Hb_100525_010 Hb_097646_010--Hb_000056_010 Hb_097646_010--Hb_003376_260 Hb_027380_230 Hb_027380_230 Hb_097646_010--Hb_027380_230 Hb_000175_350 Hb_000175_350 Hb_000979_240--Hb_000175_350 Hb_001488_270 Hb_001488_270 Hb_000979_240--Hb_001488_270 Hb_000197_290 Hb_000197_290 Hb_000979_240--Hb_000197_290 Hb_000751_140 Hb_000751_140 Hb_000979_240--Hb_000751_140 Hb_000599_130 Hb_000599_130 Hb_000979_240--Hb_000599_130 Hb_000574_510 Hb_000574_510 Hb_000979_240--Hb_000574_510 Hb_000122_220 Hb_000122_220 Hb_000358_200--Hb_000122_220 Hb_000358_200--Hb_001488_270 Hb_000358_200--Hb_003895_020 Hb_044653_020 Hb_044653_020 Hb_000358_200--Hb_044653_020 Hb_005649_080 Hb_005649_080 Hb_000358_200--Hb_005649_080 Hb_004659_090 Hb_004659_090 Hb_000358_200--Hb_004659_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.3406 121.885 67.3077 100.551 76.7211 45.0519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6687 5.41104 14.2343 23.0211 58.5548

CAGE analysis