Hb_020805_100

Information

Type -
Description -
Location Contig20805: 69850-74952
Sequence    

Annotation

kegg
ID pop:POPTR_0005s27540g
description POPTRDRAFT_1079934; hypothetical protein
nr
ID XP_012073611.1
description PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
swissprot
ID Q93VJ2
description Serine/threonine-protein kinase/endoribonuclease IRE1b OS=Arabidopsis thaliana GN=IRE1B PE=2 SV=1
trembl
ID B9H5U0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s27540g PE=4 SV=2
Gene Ontology
ID GO:0004540
description serine threonine-protein kinase endoribonuclease ire1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21524: 69865-74912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_100 0.0 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
2 Hb_000732_070 0.0816371544 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_000671_060 0.1169274684 - - protein binding protein, putative [Ricinus communis]
4 Hb_003895_020 0.1216062564 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
5 Hb_003001_040 0.1230418176 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
6 Hb_006022_010 0.1234855086 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
7 Hb_152910_010 0.1257732717 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
8 Hb_000640_190 0.1271421299 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
9 Hb_011930_100 0.127166127 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
10 Hb_000139_180 0.1317646713 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
11 Hb_007777_010 0.1319096012 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
12 Hb_001396_070 0.1331565302 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000300_550 0.1338020074 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_002259_110 0.1342906472 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
15 Hb_000334_130 0.1348916922 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
16 Hb_000470_110 0.1355142979 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
17 Hb_005403_010 0.1355899884 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
18 Hb_001488_210 0.1375767555 - - PREDICTED: protein RIK [Jatropha curcas]
19 Hb_172257_010 0.1379745249 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
20 Hb_006573_160 0.1381388115 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_020805_100 Hb_020805_100 Hb_000732_070 Hb_000732_070 Hb_020805_100--Hb_000732_070 Hb_000671_060 Hb_000671_060 Hb_020805_100--Hb_000671_060 Hb_003895_020 Hb_003895_020 Hb_020805_100--Hb_003895_020 Hb_003001_040 Hb_003001_040 Hb_020805_100--Hb_003001_040 Hb_006022_010 Hb_006022_010 Hb_020805_100--Hb_006022_010 Hb_152910_010 Hb_152910_010 Hb_020805_100--Hb_152910_010 Hb_000086_050 Hb_000086_050 Hb_000732_070--Hb_000086_050 Hb_000732_070--Hb_003895_020 Hb_002400_230 Hb_002400_230 Hb_000732_070--Hb_002400_230 Hb_000334_130 Hb_000334_130 Hb_000732_070--Hb_000334_130 Hb_006573_160 Hb_006573_160 Hb_000732_070--Hb_006573_160 Hb_003090_150 Hb_003090_150 Hb_000671_060--Hb_003090_150 Hb_000163_230 Hb_000163_230 Hb_000671_060--Hb_000163_230 Hb_002311_140 Hb_002311_140 Hb_000671_060--Hb_002311_140 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_001196_080 Hb_001196_080 Hb_000671_060--Hb_001196_080 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280 Hb_000866_080 Hb_000866_080 Hb_003895_020--Hb_000866_080 Hb_004324_060 Hb_004324_060 Hb_003895_020--Hb_004324_060 Hb_001221_090 Hb_001221_090 Hb_003895_020--Hb_001221_090 Hb_030545_030 Hb_030545_030 Hb_003895_020--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_003895_020--Hb_002903_140 Hb_155159_010 Hb_155159_010 Hb_003895_020--Hb_155159_010 Hb_024698_010 Hb_024698_010 Hb_003001_040--Hb_024698_010 Hb_003001_040--Hb_000334_130 Hb_097646_010 Hb_097646_010 Hb_003001_040--Hb_097646_010 Hb_000979_240 Hb_000979_240 Hb_003001_040--Hb_000979_240 Hb_000358_200 Hb_000358_200 Hb_003001_040--Hb_000358_200 Hb_000300_550 Hb_000300_550 Hb_006022_010--Hb_000300_550 Hb_000046_600 Hb_000046_600 Hb_006022_010--Hb_000046_600 Hb_000640_190 Hb_000640_190 Hb_006022_010--Hb_000640_190 Hb_007800_020 Hb_007800_020 Hb_006022_010--Hb_007800_020 Hb_001623_110 Hb_001623_110 Hb_006022_010--Hb_001623_110 Hb_002249_020 Hb_002249_020 Hb_006022_010--Hb_002249_020 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_152910_010--Hb_030545_030 Hb_004319_050 Hb_004319_050 Hb_152910_010--Hb_004319_050 Hb_000302_170 Hb_000302_170 Hb_152910_010--Hb_000302_170 Hb_152910_010--Hb_000300_550 Hb_152910_010--Hb_000640_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12651 10.3823 9.44778 7.34924 5.79195 4.05682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.677462 0.966271 0.765182 2.98185 5.76104

CAGE analysis