Hb_002301_310

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2301: 306967-308247
Sequence    

Annotation

kegg
ID rcu:RCOM_1674060
description zinc finger protein, putative
nr
ID XP_012091630.1
description PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
swissprot
ID Q9FZA4
description Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1
trembl
ID A0A067JDZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21459 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_310 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
2 Hb_003376_260 0.1205603407 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
3 Hb_074197_020 0.1270662423 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
4 Hb_000424_150 0.146967611 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
5 Hb_002814_060 0.1518278476 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
6 Hb_006508_030 0.1538825603 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
7 Hb_004657_090 0.1594724067 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
8 Hb_002804_020 0.1605267993 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
9 Hb_000413_070 0.1624095633 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002636_040 0.1662484998 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
11 Hb_003814_030 0.167199411 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
12 Hb_000630_030 0.1692673984 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
13 Hb_005048_140 0.1735350017 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012528_020 0.1770290551 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Jatropha curcas]
15 Hb_000347_270 0.1786287064 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
16 Hb_116420_040 0.1792692691 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004884_030 0.1802333608 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
18 Hb_018202_050 0.1829832145 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
19 Hb_001776_030 0.1876619889 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001059_130 0.1887884518 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_310 Hb_002301_310 Hb_003376_260 Hb_003376_260 Hb_002301_310--Hb_003376_260 Hb_074197_020 Hb_074197_020 Hb_002301_310--Hb_074197_020 Hb_000424_150 Hb_000424_150 Hb_002301_310--Hb_000424_150 Hb_002814_060 Hb_002814_060 Hb_002301_310--Hb_002814_060 Hb_006508_030 Hb_006508_030 Hb_002301_310--Hb_006508_030 Hb_004657_090 Hb_004657_090 Hb_002301_310--Hb_004657_090 Hb_024698_010 Hb_024698_010 Hb_003376_260--Hb_024698_010 Hb_003376_260--Hb_074197_020 Hb_116420_040 Hb_116420_040 Hb_003376_260--Hb_116420_040 Hb_005048_140 Hb_005048_140 Hb_003376_260--Hb_005048_140 Hb_003376_260--Hb_004657_090 Hb_074197_020--Hb_002814_060 Hb_074197_020--Hb_000424_150 Hb_004223_290 Hb_004223_290 Hb_074197_020--Hb_004223_290 Hb_000091_060 Hb_000091_060 Hb_074197_020--Hb_000091_060 Hb_000630_030 Hb_000630_030 Hb_074197_020--Hb_000630_030 Hb_000424_150--Hb_002814_060 Hb_000482_150 Hb_000482_150 Hb_000424_150--Hb_000482_150 Hb_000424_150--Hb_003376_260 Hb_003471_020 Hb_003471_020 Hb_000424_150--Hb_003471_020 Hb_007456_040 Hb_007456_040 Hb_002814_060--Hb_007456_040 Hb_086287_010 Hb_086287_010 Hb_002814_060--Hb_086287_010 Hb_002814_060--Hb_006508_030 Hb_001194_020 Hb_001194_020 Hb_002814_060--Hb_001194_020 Hb_002784_030 Hb_002784_030 Hb_002814_060--Hb_002784_030 Hb_018202_050 Hb_018202_050 Hb_006508_030--Hb_018202_050 Hb_000384_080 Hb_000384_080 Hb_006508_030--Hb_000384_080 Hb_001369_350 Hb_001369_350 Hb_006508_030--Hb_001369_350 Hb_012528_020 Hb_012528_020 Hb_006508_030--Hb_012528_020 Hb_000261_100 Hb_000261_100 Hb_006508_030--Hb_000261_100 Hb_001508_020 Hb_001508_020 Hb_004657_090--Hb_001508_020 Hb_002681_170 Hb_002681_170 Hb_004657_090--Hb_002681_170 Hb_004374_080 Hb_004374_080 Hb_004657_090--Hb_004374_080 Hb_004657_090--Hb_000091_060 Hb_012404_070 Hb_012404_070 Hb_004657_090--Hb_012404_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6014 6.6918 7.49395 13.1475 6.83635 11.676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.757073 0.744332 0.274973 5.53046 11.9228

CAGE analysis