Hb_000630_030

Information

Type -
Description -
Location Contig630: 37008-52555
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18200g
description POPTRDRAFT_884732; hypothetical protein
nr
ID XP_011014272.1
description PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
swissprot
ID Q9LY87
description E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
trembl
ID B9HYC3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s18200g PE=4 SV=2
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase rglg2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51801: 37025-52062 , PASA_asmbl_51802: 37010-52491 , PASA_asmbl_51803: 39628-39857 , PASA_asmbl_51804: 43488-43733 , PASA_asmbl_51806: 48635-49018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000630_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
2 Hb_000580_030 0.0841793667 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
3 Hb_015026_100 0.093108218 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
4 Hb_000640_070 0.0938128099 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
5 Hb_000413_070 0.0959365417 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004355_040 0.0977920717 - - epoxide hydrolase, putative [Ricinus communis]
7 Hb_002092_070 0.0999678738 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
8 Hb_001194_020 0.1003900155 - - microtubule associated protein xmap215, putative [Ricinus communis]
9 Hb_002045_250 0.1009864443 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
10 Hb_000098_050 0.1019158208 - - BnaCnng11900D [Brassica napus]
11 Hb_007800_020 0.1029273213 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
12 Hb_000320_290 0.1041410299 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
13 Hb_073973_150 0.1072130045 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
14 Hb_002784_030 0.1076495357 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
15 Hb_006022_010 0.1146584469 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
16 Hb_001059_130 0.11468605 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
17 Hb_000302_170 0.1147749918 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
18 Hb_150346_010 0.1149355923 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_000588_080 0.1154291304 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
20 Hb_000503_020 0.116561827 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000630_030 Hb_000630_030 Hb_000580_030 Hb_000580_030 Hb_000630_030--Hb_000580_030 Hb_015026_100 Hb_015026_100 Hb_000630_030--Hb_015026_100 Hb_000640_070 Hb_000640_070 Hb_000630_030--Hb_000640_070 Hb_000413_070 Hb_000413_070 Hb_000630_030--Hb_000413_070 Hb_004355_040 Hb_004355_040 Hb_000630_030--Hb_004355_040 Hb_002092_070 Hb_002092_070 Hb_000630_030--Hb_002092_070 Hb_001489_100 Hb_001489_100 Hb_000580_030--Hb_001489_100 Hb_000890_030 Hb_000890_030 Hb_000580_030--Hb_000890_030 Hb_007800_020 Hb_007800_020 Hb_000580_030--Hb_007800_020 Hb_027654_020 Hb_027654_020 Hb_000580_030--Hb_027654_020 Hb_005322_050 Hb_005322_050 Hb_000580_030--Hb_005322_050 Hb_001623_110 Hb_001623_110 Hb_000580_030--Hb_001623_110 Hb_000994_020 Hb_000994_020 Hb_015026_100--Hb_000994_020 Hb_000046_600 Hb_000046_600 Hb_015026_100--Hb_000046_600 Hb_015026_100--Hb_002092_070 Hb_002045_250 Hb_002045_250 Hb_015026_100--Hb_002045_250 Hb_008397_010 Hb_008397_010 Hb_015026_100--Hb_008397_010 Hb_006501_010 Hb_006501_010 Hb_015026_100--Hb_006501_010 Hb_012215_010 Hb_012215_010 Hb_000640_070--Hb_012215_010 Hb_073973_150 Hb_073973_150 Hb_000640_070--Hb_073973_150 Hb_000640_070--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_000640_070--Hb_002784_030 Hb_010272_010 Hb_010272_010 Hb_000640_070--Hb_010272_010 Hb_001194_020 Hb_001194_020 Hb_000640_070--Hb_001194_020 Hb_001349_030 Hb_001349_030 Hb_000413_070--Hb_001349_030 Hb_000413_070--Hb_004355_040 Hb_000588_080 Hb_000588_080 Hb_000413_070--Hb_000588_080 Hb_001059_130 Hb_001059_130 Hb_000413_070--Hb_001059_130 Hb_000413_070--Hb_000580_030 Hb_004355_040--Hb_000580_030 Hb_000318_040 Hb_000318_040 Hb_004355_040--Hb_000318_040 Hb_001103_090 Hb_001103_090 Hb_004355_040--Hb_001103_090 Hb_001558_040 Hb_001558_040 Hb_004355_040--Hb_001558_040 Hb_002092_070--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_002092_070--Hb_001221_090 Hb_009252_050 Hb_009252_050 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3027 17.8058 16.616 26.07 14.0816 16.0039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25782 2.8494 3.50634 14.2871 12.2351

CAGE analysis