Hb_000413_070

Information

Type -
Description -
Location Contig413: 71790-72776
Sequence    

Annotation

kegg
ID rcu:RCOM_0906800
description hypothetical protein
nr
ID XP_002518589.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXX0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0906800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000630_030 0.0959365417 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
3 Hb_001349_030 0.1133714698 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
4 Hb_004355_040 0.1142307087 - - epoxide hydrolase, putative [Ricinus communis]
5 Hb_000588_080 0.1151712451 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
6 Hb_001059_130 0.1205976427 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
7 Hb_000580_030 0.1223306889 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
8 Hb_000503_020 0.122844221 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
9 Hb_002311_190 0.1277542352 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
10 Hb_003998_010 0.1278303275 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
11 Hb_000640_070 0.1323242519 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
12 Hb_000230_130 0.1324534942 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 [Jatropha curcas]
13 Hb_007800_020 0.1341584532 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
14 Hb_092000_010 0.1356358937 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
15 Hb_001153_050 0.137011211 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
16 Hb_029866_100 0.1383810955 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
17 Hb_000320_290 0.1387767173 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
18 Hb_002804_020 0.1389490905 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
19 Hb_001488_220 0.1396455623 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_000300_090 0.1406864806 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000413_070 Hb_000413_070 Hb_000630_030 Hb_000630_030 Hb_000413_070--Hb_000630_030 Hb_001349_030 Hb_001349_030 Hb_000413_070--Hb_001349_030 Hb_004355_040 Hb_004355_040 Hb_000413_070--Hb_004355_040 Hb_000588_080 Hb_000588_080 Hb_000413_070--Hb_000588_080 Hb_001059_130 Hb_001059_130 Hb_000413_070--Hb_001059_130 Hb_000580_030 Hb_000580_030 Hb_000413_070--Hb_000580_030 Hb_000630_030--Hb_000580_030 Hb_015026_100 Hb_015026_100 Hb_000630_030--Hb_015026_100 Hb_000640_070 Hb_000640_070 Hb_000630_030--Hb_000640_070 Hb_000630_030--Hb_004355_040 Hb_002092_070 Hb_002092_070 Hb_000630_030--Hb_002092_070 Hb_000664_110 Hb_000664_110 Hb_001349_030--Hb_000664_110 Hb_007800_020 Hb_007800_020 Hb_001349_030--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_001349_030--Hb_000637_140 Hb_002400_320 Hb_002400_320 Hb_001349_030--Hb_002400_320 Hb_002311_190 Hb_002311_190 Hb_001349_030--Hb_002311_190 Hb_001349_030--Hb_000588_080 Hb_004355_040--Hb_000580_030 Hb_000318_040 Hb_000318_040 Hb_004355_040--Hb_000318_040 Hb_001103_090 Hb_001103_090 Hb_004355_040--Hb_001103_090 Hb_001558_040 Hb_001558_040 Hb_004355_040--Hb_001558_040 Hb_010315_020 Hb_010315_020 Hb_000588_080--Hb_010315_020 Hb_000588_080--Hb_001059_130 Hb_000020_160 Hb_000020_160 Hb_000588_080--Hb_000020_160 Hb_000069_480 Hb_000069_480 Hb_000588_080--Hb_000069_480 Hb_001194_020 Hb_001194_020 Hb_000588_080--Hb_001194_020 Hb_044486_020 Hb_044486_020 Hb_000588_080--Hb_044486_020 Hb_000284_230 Hb_000284_230 Hb_001059_130--Hb_000284_230 Hb_001059_130--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_001059_130--Hb_000358_100 Hb_001059_130--Hb_000020_160 Hb_006355_020 Hb_006355_020 Hb_001059_130--Hb_006355_020 Hb_001489_100 Hb_001489_100 Hb_000580_030--Hb_001489_100 Hb_000890_030 Hb_000890_030 Hb_000580_030--Hb_000890_030 Hb_000580_030--Hb_007800_020 Hb_027654_020 Hb_027654_020 Hb_000580_030--Hb_027654_020 Hb_005322_050 Hb_005322_050 Hb_000580_030--Hb_005322_050 Hb_001623_110 Hb_001623_110 Hb_000580_030--Hb_001623_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7796 16.1788 15.9485 29.4367 9.64391 13.6592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43877 2.99789 3.12913 10.6745 16.1458

CAGE analysis