Hb_000366_190

Information

Type -
Description -
Location Contig366: 208946-214841
Sequence    

Annotation

kegg
ID rcu:RCOM_0551460
description Phosphoenolpyruvate carboxylase, putative (EC:1.3.1.74)
nr
ID XP_002530381.1
description Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
swissprot
ID Q02909
description Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Glycine max GN=PPC16 PE=2 SV=1
trembl
ID B9SWL2
description Phosphoenolpyruvate carboxylase, putative OS=Ricinus communis GN=RCOM_0551460 PE=3 SV=1
Gene Ontology
ID GO:0008964
description phosphoenolpyruvate housekeeping isozyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37687: 209061-214823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000366_190 0.0 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
2 Hb_009119_030 0.144189061 - - GMFP4 [Medicago truncatula]
3 Hb_020805_010 0.1478775185 - - protein with unknown function [Ricinus communis]
4 Hb_000062_030 0.1485192877 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
5 Hb_009485_020 0.1494690743 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
6 Hb_002320_070 0.1542607636 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000749_110 0.1575877817 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
8 Hb_006483_010 0.1585303534 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_013818_030 0.1587848284 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001901_080 0.1610519783 - - PREDICTED: xylose isomerase [Jatropha curcas]
11 Hb_003894_040 0.1618987249 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_001031_040 0.1626077306 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001584_370 0.1656616138 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
14 Hb_000091_060 0.1662027842 - - PREDICTED: galactose oxidase [Jatropha curcas]
15 Hb_002307_350 0.1669110397 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
16 Hb_002044_050 0.1679739654 - - -
17 Hb_002235_120 0.1696268242 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_001301_090 0.17065914 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000021_040 0.1709082419 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
20 Hb_005843_160 0.1709289334 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]

Gene co-expression network

sample Hb_000366_190 Hb_000366_190 Hb_009119_030 Hb_009119_030 Hb_000366_190--Hb_009119_030 Hb_020805_010 Hb_020805_010 Hb_000366_190--Hb_020805_010 Hb_000062_030 Hb_000062_030 Hb_000366_190--Hb_000062_030 Hb_009485_020 Hb_009485_020 Hb_000366_190--Hb_009485_020 Hb_002320_070 Hb_002320_070 Hb_000366_190--Hb_002320_070 Hb_000749_110 Hb_000749_110 Hb_000366_190--Hb_000749_110 Hb_009119_030--Hb_002320_070 Hb_002411_130 Hb_002411_130 Hb_009119_030--Hb_002411_130 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_000159_110 Hb_000159_110 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_121467_010 Hb_121467_010 Hb_009119_030--Hb_121467_010 Hb_000755_080 Hb_000755_080 Hb_020805_010--Hb_000755_080 Hb_000264_010 Hb_000264_010 Hb_020805_010--Hb_000264_010 Hb_000720_070 Hb_000720_070 Hb_020805_010--Hb_000720_070 Hb_000261_520 Hb_000261_520 Hb_020805_010--Hb_000261_520 Hb_027420_050 Hb_027420_050 Hb_020805_010--Hb_027420_050 Hb_000375_030 Hb_000375_030 Hb_020805_010--Hb_000375_030 Hb_000505_110 Hb_000505_110 Hb_000062_030--Hb_000505_110 Hb_008147_050 Hb_008147_050 Hb_000062_030--Hb_008147_050 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_013818_030 Hb_013818_030 Hb_000062_030--Hb_013818_030 Hb_186857_010 Hb_186857_010 Hb_000062_030--Hb_186857_010 Hb_003858_040 Hb_003858_040 Hb_009485_020--Hb_003858_040 Hb_001396_280 Hb_001396_280 Hb_009485_020--Hb_001396_280 Hb_029866_100 Hb_029866_100 Hb_009485_020--Hb_029866_100 Hb_000733_050 Hb_000733_050 Hb_009485_020--Hb_000733_050 Hb_003894_040 Hb_003894_040 Hb_009485_020--Hb_003894_040 Hb_130323_010 Hb_130323_010 Hb_009485_020--Hb_130323_010 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_002320_070--Hb_003894_040 Hb_000037_110 Hb_000037_110 Hb_000749_110--Hb_000037_110 Hb_006483_010 Hb_006483_010 Hb_000749_110--Hb_006483_010 Hb_000749_110--Hb_000755_080 Hb_000749_110--Hb_000261_520 Hb_002044_050 Hb_002044_050 Hb_000749_110--Hb_002044_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.6431 24.9966 22.6555 50.9527 91.0168 55.2168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.10711 2.52156 10.8481 24.4936 12.8809

CAGE analysis