Hb_000264_010

Information

Type -
Description -
Location Contig264: 1720-3661
Sequence    

Annotation

kegg
ID rcu:RCOM_0935130
description hypothetical protein
nr
ID XP_012091559.1
description PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21404 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27580: 1730-3653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_010 0.0 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
2 Hb_000021_040 0.1025469647 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
3 Hb_064903_010 0.1141600513 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
4 Hb_067193_010 0.1214255696 - - -
5 Hb_001301_090 0.1222172926 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000101_350 0.1237813306 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
7 Hb_000951_110 0.1246816721 - - heat shock protein, putative [Ricinus communis]
8 Hb_000331_330 0.1259480798 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
9 Hb_002044_170 0.1267610099 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
10 Hb_000441_180 0.1271269477 - - Early endosome antigen, putative [Ricinus communis]
11 Hb_027420_050 0.1272885954 - - -
12 Hb_000212_320 0.1296837191 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
13 Hb_003847_120 0.1297255055 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_030627_060 0.1298214862 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
15 Hb_132697_010 0.1301176747 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003044_020 0.1303475302 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_007426_150 0.131401639 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
18 Hb_002392_030 0.1319862037 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
19 Hb_008112_030 0.1327201072 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002066_080 0.132757854 - - PREDICTED: protein CYPRO4 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_010 Hb_000264_010 Hb_000021_040 Hb_000021_040 Hb_000264_010--Hb_000021_040 Hb_064903_010 Hb_064903_010 Hb_000264_010--Hb_064903_010 Hb_067193_010 Hb_067193_010 Hb_000264_010--Hb_067193_010 Hb_001301_090 Hb_001301_090 Hb_000264_010--Hb_001301_090 Hb_000101_350 Hb_000101_350 Hb_000264_010--Hb_000101_350 Hb_000951_110 Hb_000951_110 Hb_000264_010--Hb_000951_110 Hb_022250_110 Hb_022250_110 Hb_000021_040--Hb_022250_110 Hb_000037_110 Hb_000037_110 Hb_000021_040--Hb_000037_110 Hb_000768_190 Hb_000768_190 Hb_000021_040--Hb_000768_190 Hb_000343_190 Hb_000343_190 Hb_000021_040--Hb_000343_190 Hb_000209_070 Hb_000209_070 Hb_000021_040--Hb_000209_070 Hb_001473_090 Hb_001473_090 Hb_000021_040--Hb_001473_090 Hb_064903_010--Hb_000768_190 Hb_111985_080 Hb_111985_080 Hb_064903_010--Hb_111985_080 Hb_002301_080 Hb_002301_080 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_000832_130 Hb_000832_130 Hb_064903_010--Hb_000832_130 Hb_003044_020 Hb_003044_020 Hb_064903_010--Hb_003044_020 Hb_001221_150 Hb_001221_150 Hb_067193_010--Hb_001221_150 Hb_005731_090 Hb_005731_090 Hb_067193_010--Hb_005731_090 Hb_000856_140 Hb_000856_140 Hb_067193_010--Hb_000856_140 Hb_001307_080 Hb_001307_080 Hb_067193_010--Hb_001307_080 Hb_004453_110 Hb_004453_110 Hb_067193_010--Hb_004453_110 Hb_003040_020 Hb_003040_020 Hb_067193_010--Hb_003040_020 Hb_001301_090--Hb_067193_010 Hb_002044_170 Hb_002044_170 Hb_001301_090--Hb_002044_170 Hb_010417_060 Hb_010417_060 Hb_001301_090--Hb_010417_060 Hb_001301_090--Hb_005731_090 Hb_032920_130 Hb_032920_130 Hb_001301_090--Hb_032920_130 Hb_001301_090--Hb_004453_110 Hb_008112_030 Hb_008112_030 Hb_000101_350--Hb_008112_030 Hb_000115_160 Hb_000115_160 Hb_000101_350--Hb_000115_160 Hb_000331_330 Hb_000331_330 Hb_000101_350--Hb_000331_330 Hb_007676_100 Hb_007676_100 Hb_000101_350--Hb_007676_100 Hb_006882_020 Hb_006882_020 Hb_000101_350--Hb_006882_020 Hb_000960_050 Hb_000960_050 Hb_000101_350--Hb_000960_050 Hb_000951_110--Hb_000832_130 Hb_020665_030 Hb_020665_030 Hb_000951_110--Hb_020665_030 Hb_000671_110 Hb_000671_110 Hb_000951_110--Hb_000671_110 Hb_002471_210 Hb_002471_210 Hb_000951_110--Hb_002471_210 Hb_002301_260 Hb_002301_260 Hb_000951_110--Hb_002301_260 Hb_007108_030 Hb_007108_030 Hb_000951_110--Hb_007108_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.42511 8.94347 3.49725 7.1252 16.2565 13.2416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30346 3.01857 5.34829 4.11338 4.83503

CAGE analysis