Hb_000733_050

Information

Type -
Description -
Location Contig733: 23247-25863
Sequence    

Annotation

kegg
ID rcu:RCOM_0497660
description hypothetical protein
nr
ID XP_012088254.1
description PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01355 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56147: 23302-25838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_050 0.0 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
2 Hb_029866_100 0.1038073985 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
3 Hb_009485_020 0.1148028714 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
4 Hb_002804_020 0.1153729892 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
5 Hb_002837_060 0.1313612413 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
6 Hb_116349_060 0.1355082634 - - PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
7 Hb_003858_040 0.1359637997 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
8 Hb_001396_280 0.1362712787 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
9 Hb_000086_560 0.1371725109 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
10 Hb_000120_550 0.1399786111 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
11 Hb_078477_050 0.1404046738 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
12 Hb_001501_060 0.1428087026 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000221_120 0.1453679051 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
14 Hb_003894_040 0.1477254182 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_008177_030 0.1479207611 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_006508_030 0.1503486087 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
17 Hb_000172_540 0.1530297133 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
18 Hb_000703_210 0.1541746988 - - Inactive protein kinase [Gossypium arboreum]
19 Hb_011689_060 0.154471298 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
20 Hb_029904_020 0.1544784176 - - hypothetical protein JCGZ_06227 [Jatropha curcas]

Gene co-expression network

sample Hb_000733_050 Hb_000733_050 Hb_029866_100 Hb_029866_100 Hb_000733_050--Hb_029866_100 Hb_009485_020 Hb_009485_020 Hb_000733_050--Hb_009485_020 Hb_002804_020 Hb_002804_020 Hb_000733_050--Hb_002804_020 Hb_002837_060 Hb_002837_060 Hb_000733_050--Hb_002837_060 Hb_116349_060 Hb_116349_060 Hb_000733_050--Hb_116349_060 Hb_003858_040 Hb_003858_040 Hb_000733_050--Hb_003858_040 Hb_001396_280 Hb_001396_280 Hb_029866_100--Hb_001396_280 Hb_001500_110 Hb_001500_110 Hb_029866_100--Hb_001500_110 Hb_012215_010 Hb_012215_010 Hb_029866_100--Hb_012215_010 Hb_029866_100--Hb_002837_060 Hb_000120_550 Hb_000120_550 Hb_029866_100--Hb_000120_550 Hb_009485_020--Hb_003858_040 Hb_009485_020--Hb_001396_280 Hb_009485_020--Hb_029866_100 Hb_003894_040 Hb_003894_040 Hb_009485_020--Hb_003894_040 Hb_130323_010 Hb_130323_010 Hb_009485_020--Hb_130323_010 Hb_002541_020 Hb_002541_020 Hb_002804_020--Hb_002541_020 Hb_002804_020--Hb_029866_100 Hb_000270_870 Hb_000270_870 Hb_002804_020--Hb_000270_870 Hb_074449_010 Hb_074449_010 Hb_002804_020--Hb_074449_010 Hb_000413_070 Hb_000413_070 Hb_002804_020--Hb_000413_070 Hb_032990_010 Hb_032990_010 Hb_002837_060--Hb_032990_010 Hb_000101_380 Hb_000101_380 Hb_002837_060--Hb_000101_380 Hb_000983_170 Hb_000983_170 Hb_002837_060--Hb_000983_170 Hb_005503_040 Hb_005503_040 Hb_002837_060--Hb_005503_040 Hb_002837_060--Hb_001396_280 Hb_000879_160 Hb_000879_160 Hb_002837_060--Hb_000879_160 Hb_003891_070 Hb_003891_070 Hb_116349_060--Hb_003891_070 Hb_000776_100 Hb_000776_100 Hb_116349_060--Hb_000776_100 Hb_003038_120 Hb_003038_120 Hb_116349_060--Hb_003038_120 Hb_116349_060--Hb_000120_550 Hb_000737_030 Hb_000737_030 Hb_116349_060--Hb_000737_030 Hb_007951_040 Hb_007951_040 Hb_116349_060--Hb_007951_040 Hb_000009_480 Hb_000009_480 Hb_003858_040--Hb_000009_480 Hb_073973_160 Hb_073973_160 Hb_003858_040--Hb_073973_160 Hb_001050_010 Hb_001050_010 Hb_003858_040--Hb_001050_010 Hb_000868_060 Hb_000868_060 Hb_003858_040--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_003858_040--Hb_000002_490 Hb_003858_040--Hb_001396_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5031 9.57759 14.1135 22.428 17.5371 21.666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.71979 4.28105 3.12009 18.2594 8.38338

CAGE analysis