Hb_002804_020

Information

Type -
Description -
Location Contig2804: 20558-22121
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24610g
description POPTRDRAFT_829634; epsin N-terminal homology domain-containing family protein
nr
ID XP_002298359.2
description epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
swissprot
ID P47160
description Epsin-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ENT3 PE=1 SV=1
trembl
ID B9GJP0
description Epsin N-terminal homology domain-containing family protein OS=Populus trichocarpa GN=POPTR_0001s24610g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29269: 20345-22074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002804_020 0.0 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
2 Hb_000733_050 0.1153729892 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
3 Hb_002541_020 0.1299410762 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_029866_100 0.1323834242 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
5 Hb_000270_870 0.1332427248 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
6 Hb_074449_010 0.1384260096 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
7 Hb_000413_070 0.1389490905 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000120_550 0.1397620995 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
9 Hb_010942_020 0.15027163 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000070_030 0.1523866475 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
11 Hb_001519_040 0.156407202 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
12 Hb_000172_540 0.1567741767 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
13 Hb_003398_100 0.1582551646 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003687_210 0.160294803 - - PREDICTED: malate dehydrogenase [Populus euphratica]
15 Hb_002301_310 0.1605267993 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
16 Hb_018202_050 0.1620565459 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
17 Hb_000579_060 0.1623608415 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
18 Hb_000630_030 0.1623638284 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
19 Hb_074197_020 0.1624033609 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
20 Hb_029904_020 0.1626801154 - - hypothetical protein JCGZ_06227 [Jatropha curcas]

Gene co-expression network

sample Hb_002804_020 Hb_002804_020 Hb_000733_050 Hb_000733_050 Hb_002804_020--Hb_000733_050 Hb_002541_020 Hb_002541_020 Hb_002804_020--Hb_002541_020 Hb_029866_100 Hb_029866_100 Hb_002804_020--Hb_029866_100 Hb_000270_870 Hb_000270_870 Hb_002804_020--Hb_000270_870 Hb_074449_010 Hb_074449_010 Hb_002804_020--Hb_074449_010 Hb_000413_070 Hb_000413_070 Hb_002804_020--Hb_000413_070 Hb_000733_050--Hb_029866_100 Hb_009485_020 Hb_009485_020 Hb_000733_050--Hb_009485_020 Hb_002837_060 Hb_002837_060 Hb_000733_050--Hb_002837_060 Hb_116349_060 Hb_116349_060 Hb_000733_050--Hb_116349_060 Hb_003858_040 Hb_003858_040 Hb_000733_050--Hb_003858_040 Hb_002541_020--Hb_000413_070 Hb_002541_020--Hb_074449_010 Hb_000120_550 Hb_000120_550 Hb_002541_020--Hb_000120_550 Hb_165279_010 Hb_165279_010 Hb_002541_020--Hb_165279_010 Hb_002818_050 Hb_002818_050 Hb_002541_020--Hb_002818_050 Hb_001396_280 Hb_001396_280 Hb_029866_100--Hb_001396_280 Hb_001500_110 Hb_001500_110 Hb_029866_100--Hb_001500_110 Hb_012215_010 Hb_012215_010 Hb_029866_100--Hb_012215_010 Hb_029866_100--Hb_002837_060 Hb_029866_100--Hb_000120_550 Hb_003872_010 Hb_003872_010 Hb_000270_870--Hb_003872_010 Hb_001776_030 Hb_001776_030 Hb_000270_870--Hb_001776_030 Hb_001488_340 Hb_001488_340 Hb_000270_870--Hb_001488_340 Hb_008511_060 Hb_008511_060 Hb_000270_870--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000270_870--Hb_010053_040 Hb_074449_010--Hb_001488_340 Hb_161478_010 Hb_161478_010 Hb_074449_010--Hb_161478_010 Hb_010883_140 Hb_010883_140 Hb_074449_010--Hb_010883_140 Hb_074449_010--Hb_000270_870 Hb_000630_030 Hb_000630_030 Hb_000413_070--Hb_000630_030 Hb_001349_030 Hb_001349_030 Hb_000413_070--Hb_001349_030 Hb_004355_040 Hb_004355_040 Hb_000413_070--Hb_004355_040 Hb_000588_080 Hb_000588_080 Hb_000413_070--Hb_000588_080 Hb_001059_130 Hb_001059_130 Hb_000413_070--Hb_001059_130 Hb_000580_030 Hb_000580_030 Hb_000413_070--Hb_000580_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.243 3.22857 8.0395 9.5999 4.4117 8.44288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50337 1.38236 0.538273 4.78897 5.04124

CAGE analysis