Hb_001500_110

Information

Type -
Description -
Location Contig1500: 120323-122512
Sequence    

Annotation

kegg
ID rcu:RCOM_1437490
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002512621.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID O80809
description Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1
trembl
ID B9RFV2
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1437490 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat receptor-like protein clavata2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 050_J24.ab1: 121661-122437

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_110 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002828_020 0.0691859182 - - protein binding protein, putative [Ricinus communis]
3 Hb_009049_020 0.092523036 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
4 Hb_002876_320 0.09499628 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
5 Hb_029866_100 0.0957073461 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
6 Hb_012322_020 0.0966791196 - - -
7 Hb_000617_100 0.0989674227 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
8 Hb_000696_010 0.0996509114 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
9 Hb_005797_010 0.1002643693 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
10 Hb_000009_400 0.1003319094 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
11 Hb_001789_030 0.1027079378 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
12 Hb_009529_030 0.1056375677 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
13 Hb_000107_080 0.1059261157 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
14 Hb_000683_070 0.1076883498 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
15 Hb_000071_120 0.1079526199 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
16 Hb_001227_130 0.1086127169 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
17 Hb_001018_130 0.1088073124 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
18 Hb_000146_050 0.1093317022 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
19 Hb_001635_160 0.1095344683 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
20 Hb_005503_040 0.1104407962 - - PREDICTED: AMP deaminase [Jatropha curcas]

Gene co-expression network

sample Hb_001500_110 Hb_001500_110 Hb_002828_020 Hb_002828_020 Hb_001500_110--Hb_002828_020 Hb_009049_020 Hb_009049_020 Hb_001500_110--Hb_009049_020 Hb_002876_320 Hb_002876_320 Hb_001500_110--Hb_002876_320 Hb_029866_100 Hb_029866_100 Hb_001500_110--Hb_029866_100 Hb_012322_020 Hb_012322_020 Hb_001500_110--Hb_012322_020 Hb_000617_100 Hb_000617_100 Hb_001500_110--Hb_000617_100 Hb_008120_010 Hb_008120_010 Hb_002828_020--Hb_008120_010 Hb_002828_020--Hb_002876_320 Hb_001677_080 Hb_001677_080 Hb_002828_020--Hb_001677_080 Hb_001492_020 Hb_001492_020 Hb_002828_020--Hb_001492_020 Hb_000683_070 Hb_000683_070 Hb_002828_020--Hb_000683_070 Hb_000208_260 Hb_000208_260 Hb_009049_020--Hb_000208_260 Hb_002398_030 Hb_002398_030 Hb_009049_020--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_009049_020--Hb_000445_050 Hb_009049_020--Hb_008120_010 Hb_058999_030 Hb_058999_030 Hb_009049_020--Hb_058999_030 Hb_003688_090 Hb_003688_090 Hb_009049_020--Hb_003688_090 Hb_002876_320--Hb_002398_030 Hb_000008_220 Hb_000008_220 Hb_002876_320--Hb_000008_220 Hb_008120_030 Hb_008120_030 Hb_002876_320--Hb_008120_030 Hb_000009_400 Hb_000009_400 Hb_002876_320--Hb_000009_400 Hb_033642_030 Hb_033642_030 Hb_002876_320--Hb_033642_030 Hb_002876_320--Hb_000445_050 Hb_001396_280 Hb_001396_280 Hb_029866_100--Hb_001396_280 Hb_012215_010 Hb_012215_010 Hb_029866_100--Hb_012215_010 Hb_000733_050 Hb_000733_050 Hb_029866_100--Hb_000733_050 Hb_002837_060 Hb_002837_060 Hb_029866_100--Hb_002837_060 Hb_000120_550 Hb_000120_550 Hb_029866_100--Hb_000120_550 Hb_000146_050 Hb_000146_050 Hb_012322_020--Hb_000146_050 Hb_012322_020--Hb_000009_400 Hb_001051_080 Hb_001051_080 Hb_012322_020--Hb_001051_080 Hb_001635_160 Hb_001635_160 Hb_012322_020--Hb_001635_160 Hb_172632_120 Hb_172632_120 Hb_012322_020--Hb_172632_120 Hb_002235_210 Hb_002235_210 Hb_012322_020--Hb_002235_210 Hb_007576_110 Hb_007576_110 Hb_000617_100--Hb_007576_110 Hb_003549_150 Hb_003549_150 Hb_000617_100--Hb_003549_150 Hb_014361_070 Hb_014361_070 Hb_000617_100--Hb_014361_070 Hb_000617_100--Hb_000683_070 Hb_001195_560 Hb_001195_560 Hb_000617_100--Hb_001195_560 Hb_000617_100--Hb_001051_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8581 9.77202 10.6746 27.1571 15.6267 16.9126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8617 6.24929 10.1071 13.1938 7.86263

CAGE analysis