Hb_161478_010

Information

Type -
Description -
Location Contig161478: 884-2548
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03760g
description POPTRDRAFT_551020; ABC transporter family protein
nr
ID AIU41666.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q3EDJ0
description ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1
trembl
ID A0A097P9U8
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI19 PE=2 SV=1
Gene Ontology
ID GO:0005886
description abc transporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14465: 1127-2121 , PASA_asmbl_14466: 1518-2121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161478_010 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_074449_010 0.1401496695 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
3 Hb_162040_010 0.1466500511 - - -
4 Hb_001085_260 0.1699522891 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
5 Hb_002485_030 0.1825549633 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
6 Hb_007951_040 0.1826975278 - - signal peptidase family protein [Populus trichocarpa]
7 Hb_007477_030 0.1906921569 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
8 Hb_010942_020 0.1907714051 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000120_550 0.19151785 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
10 Hb_002804_020 0.1919170349 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
11 Hb_007919_080 0.1933189312 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
12 Hb_000261_330 0.1943308307 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
13 Hb_116349_060 0.1949639279 - - PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
14 Hb_002217_380 0.1952503697 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
15 Hb_000174_050 0.1960780419 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
16 Hb_000950_070 0.1976815714 - - PREDICTED: uncharacterized protein LOC105645259 isoform X2 [Jatropha curcas]
17 Hb_010053_040 0.1998641297 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
18 Hb_001488_340 0.2006346805 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
19 Hb_003943_050 0.2009350212 - - phosphoglucomutase, putative [Ricinus communis]
20 Hb_114336_030 0.2019461684 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]

Gene co-expression network

sample Hb_161478_010 Hb_161478_010 Hb_074449_010 Hb_074449_010 Hb_161478_010--Hb_074449_010 Hb_162040_010 Hb_162040_010 Hb_161478_010--Hb_162040_010 Hb_001085_260 Hb_001085_260 Hb_161478_010--Hb_001085_260 Hb_002485_030 Hb_002485_030 Hb_161478_010--Hb_002485_030 Hb_007951_040 Hb_007951_040 Hb_161478_010--Hb_007951_040 Hb_007477_030 Hb_007477_030 Hb_161478_010--Hb_007477_030 Hb_001488_340 Hb_001488_340 Hb_074449_010--Hb_001488_340 Hb_002804_020 Hb_002804_020 Hb_074449_010--Hb_002804_020 Hb_010883_140 Hb_010883_140 Hb_074449_010--Hb_010883_140 Hb_002541_020 Hb_002541_020 Hb_074449_010--Hb_002541_020 Hb_000270_870 Hb_000270_870 Hb_074449_010--Hb_000270_870 Hb_162040_010--Hb_007951_040 Hb_001025_110 Hb_001025_110 Hb_162040_010--Hb_001025_110 Hb_001454_380 Hb_001454_380 Hb_162040_010--Hb_001454_380 Hb_000959_250 Hb_000959_250 Hb_162040_010--Hb_000959_250 Hb_070469_010 Hb_070469_010 Hb_162040_010--Hb_070469_010 Hb_003050_370 Hb_003050_370 Hb_162040_010--Hb_003050_370 Hb_001085_260--Hb_002485_030 Hb_002960_150 Hb_002960_150 Hb_001085_260--Hb_002960_150 Hb_003760_030 Hb_003760_030 Hb_001085_260--Hb_003760_030 Hb_002284_210 Hb_002284_210 Hb_001085_260--Hb_002284_210 Hb_000207_150 Hb_000207_150 Hb_001085_260--Hb_000207_150 Hb_003119_090 Hb_003119_090 Hb_001085_260--Hb_003119_090 Hb_002485_030--Hb_003760_030 Hb_002485_030--Hb_003119_090 Hb_006816_100 Hb_006816_100 Hb_002485_030--Hb_006816_100 Hb_000103_120 Hb_000103_120 Hb_002485_030--Hb_000103_120 Hb_000494_080 Hb_000494_080 Hb_002485_030--Hb_000494_080 Hb_002836_140 Hb_002836_140 Hb_007951_040--Hb_002836_140 Hb_002783_170 Hb_002783_170 Hb_007951_040--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_007951_040--Hb_000776_100 Hb_003688_090 Hb_003688_090 Hb_007951_040--Hb_003688_090 Hb_003038_120 Hb_003038_120 Hb_007951_040--Hb_003038_120 Hb_000915_080 Hb_000915_080 Hb_007951_040--Hb_000915_080 Hb_005064_010 Hb_005064_010 Hb_007477_030--Hb_005064_010 Hb_007477_030--Hb_002284_210 Hb_004064_040 Hb_004064_040 Hb_007477_030--Hb_004064_040 Hb_000072_300 Hb_000072_300 Hb_007477_030--Hb_000072_300 Hb_000154_050 Hb_000154_050 Hb_007477_030--Hb_000154_050 Hb_000215_090 Hb_000215_090 Hb_007477_030--Hb_000215_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.99491 0.807056 9.15972 7.14646 2.58954 6.53774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85579 3.11553 0.412949 3.35137 1.13709

CAGE analysis