Hb_001454_380

Information

Type -
Description -
Location Contig1454: 288484-295225
Sequence    

Annotation

kegg
ID rcu:RCOM_0681730
description hypothetical protein
nr
ID XP_012084244.1
description PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
swissprot
ID Q8K368
description Fanconi anemia group I protein homolog OS=Mus musculus GN=Fanci PE=1 SV=2
trembl
ID B9RT78
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0681730 PE=4 SV=1
Gene Ontology
ID GO:0009506
description fanconi anemia group i protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11804: 288193-288815 , PASA_asmbl_11805: 288997-290684 , PASA_asmbl_11806: 290829-291623 , PASA_asmbl_11807: 292905-294408 , PASA_asmbl_11808: 294872-295329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_380 0.0 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
2 Hb_002783_170 0.1039529424 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
3 Hb_002309_010 0.1090938748 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
4 Hb_000844_070 0.1093984397 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
5 Hb_000480_010 0.1119825352 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019053_020 0.1133126661 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
7 Hb_005754_010 0.1141550486 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
8 Hb_001341_120 0.1159109176 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
9 Hb_000414_050 0.1180290951 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
10 Hb_000915_080 0.1186751961 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
11 Hb_000208_210 0.1189676849 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
12 Hb_008103_040 0.1226929859 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
13 Hb_002836_140 0.1232228048 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
14 Hb_000007_280 0.1256479926 - - hypothetical protein VITISV_000066 [Vitis vinifera]
15 Hb_032278_020 0.1256752933 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
16 Hb_001541_090 0.1266687533 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_000776_100 0.1277884544 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
18 Hb_011671_090 0.1282590887 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
19 Hb_007951_040 0.1282936481 - - signal peptidase family protein [Populus trichocarpa]
20 Hb_000392_050 0.1301893826 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_380 Hb_001454_380 Hb_002783_170 Hb_002783_170 Hb_001454_380--Hb_002783_170 Hb_002309_010 Hb_002309_010 Hb_001454_380--Hb_002309_010 Hb_000844_070 Hb_000844_070 Hb_001454_380--Hb_000844_070 Hb_000480_010 Hb_000480_010 Hb_001454_380--Hb_000480_010 Hb_019053_020 Hb_019053_020 Hb_001454_380--Hb_019053_020 Hb_005754_010 Hb_005754_010 Hb_001454_380--Hb_005754_010 Hb_000414_050 Hb_000414_050 Hb_002783_170--Hb_000414_050 Hb_000776_100 Hb_000776_100 Hb_002783_170--Hb_000776_100 Hb_002836_140 Hb_002836_140 Hb_002783_170--Hb_002836_140 Hb_000915_080 Hb_000915_080 Hb_002783_170--Hb_000915_080 Hb_007951_040 Hb_007951_040 Hb_002783_170--Hb_007951_040 Hb_000101_380 Hb_000101_380 Hb_002783_170--Hb_000101_380 Hb_002309_010--Hb_005754_010 Hb_000351_120 Hb_000351_120 Hb_002309_010--Hb_000351_120 Hb_001433_070 Hb_001433_070 Hb_002309_010--Hb_001433_070 Hb_000120_430 Hb_000120_430 Hb_002309_010--Hb_000120_430 Hb_000270_630 Hb_000270_630 Hb_002309_010--Hb_000270_630 Hb_032278_020 Hb_032278_020 Hb_002309_010--Hb_032278_020 Hb_000011_360 Hb_000011_360 Hb_000844_070--Hb_000011_360 Hb_005588_090 Hb_005588_090 Hb_000844_070--Hb_005588_090 Hb_000844_070--Hb_000120_430 Hb_116349_070 Hb_116349_070 Hb_000844_070--Hb_116349_070 Hb_001347_040 Hb_001347_040 Hb_000844_070--Hb_001347_040 Hb_004209_020 Hb_004209_020 Hb_000844_070--Hb_004209_020 Hb_003126_100 Hb_003126_100 Hb_000480_010--Hb_003126_100 Hb_001102_080 Hb_001102_080 Hb_000480_010--Hb_001102_080 Hb_002888_070 Hb_002888_070 Hb_000480_010--Hb_002888_070 Hb_001341_120 Hb_001341_120 Hb_000480_010--Hb_001341_120 Hb_000868_060 Hb_000868_060 Hb_000480_010--Hb_000868_060 Hb_007044_040 Hb_007044_040 Hb_000480_010--Hb_007044_040 Hb_148079_010 Hb_148079_010 Hb_019053_020--Hb_148079_010 Hb_001541_090 Hb_001541_090 Hb_019053_020--Hb_001541_090 Hb_012023_020 Hb_012023_020 Hb_019053_020--Hb_012023_020 Hb_103760_010 Hb_103760_010 Hb_019053_020--Hb_103760_010 Hb_126295_010 Hb_126295_010 Hb_019053_020--Hb_126295_010 Hb_001488_410 Hb_001488_410 Hb_019053_020--Hb_001488_410 Hb_005754_010--Hb_032278_020 Hb_164544_010 Hb_164544_010 Hb_005754_010--Hb_164544_010 Hb_005754_010--Hb_000120_430 Hb_005754_010--Hb_103760_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.605168 0.293695 0.678989 0.740113 1.08163 1.03875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.243956 0.471969 0.215248 0.592337 0.205874

CAGE analysis