Hb_000011_360

Information

Type -
Description -
Location Contig11: 376428-377552
Sequence    

Annotation

kegg
ID vvi:100244672
description translation initiation factor eIF-2B subunit alpha-like
nr
ID XP_004303749.1
description PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
swissprot
ID Q54I81
description Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1
trembl
ID A0A067L811
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24634 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_360 0.0 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
2 Hb_032278_020 0.0869360635 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
3 Hb_000844_070 0.0873983016 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
4 Hb_018790_070 0.0914894933 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
5 Hb_002309_010 0.0960697607 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
6 Hb_005965_030 0.0979800161 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
7 Hb_004209_020 0.098749638 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
8 Hb_002157_260 0.1013044053 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
9 Hb_006688_050 0.1024728553 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
10 Hb_000414_050 0.1038914366 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
11 Hb_005588_090 0.1042164705 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
12 Hb_001102_080 0.1054945856 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
13 Hb_001307_080 0.1055436852 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
14 Hb_001488_200 0.1061282525 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
15 Hb_000351_140 0.1068065623 - - PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X3 [Pyrus x bretschneideri]
16 Hb_000331_060 0.1087216123 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
17 Hb_001433_070 0.1089908713 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
18 Hb_004785_100 0.1092934639 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001832_130 0.1127327492 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
20 Hb_001408_100 0.112829229 - - pseudouridylate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000011_360 Hb_000011_360 Hb_032278_020 Hb_032278_020 Hb_000011_360--Hb_032278_020 Hb_000844_070 Hb_000844_070 Hb_000011_360--Hb_000844_070 Hb_018790_070 Hb_018790_070 Hb_000011_360--Hb_018790_070 Hb_002309_010 Hb_002309_010 Hb_000011_360--Hb_002309_010 Hb_005965_030 Hb_005965_030 Hb_000011_360--Hb_005965_030 Hb_004209_020 Hb_004209_020 Hb_000011_360--Hb_004209_020 Hb_000059_140 Hb_000059_140 Hb_032278_020--Hb_000059_140 Hb_000648_100 Hb_000648_100 Hb_032278_020--Hb_000648_100 Hb_000923_080 Hb_000923_080 Hb_032278_020--Hb_000923_080 Hb_011930_080 Hb_011930_080 Hb_032278_020--Hb_011930_080 Hb_001102_080 Hb_001102_080 Hb_032278_020--Hb_001102_080 Hb_032278_020--Hb_004209_020 Hb_005588_090 Hb_005588_090 Hb_000844_070--Hb_005588_090 Hb_000120_430 Hb_000120_430 Hb_000844_070--Hb_000120_430 Hb_116349_070 Hb_116349_070 Hb_000844_070--Hb_116349_070 Hb_001347_040 Hb_001347_040 Hb_000844_070--Hb_001347_040 Hb_000844_070--Hb_004209_020 Hb_018790_070--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_018790_070--Hb_002942_050 Hb_000392_050 Hb_000392_050 Hb_018790_070--Hb_000392_050 Hb_002157_260 Hb_002157_260 Hb_018790_070--Hb_002157_260 Hb_000395_020 Hb_000395_020 Hb_018790_070--Hb_000395_020 Hb_000480_010 Hb_000480_010 Hb_018790_070--Hb_000480_010 Hb_005754_010 Hb_005754_010 Hb_002309_010--Hb_005754_010 Hb_000351_120 Hb_000351_120 Hb_002309_010--Hb_000351_120 Hb_001433_070 Hb_001433_070 Hb_002309_010--Hb_001433_070 Hb_002309_010--Hb_000120_430 Hb_000270_630 Hb_000270_630 Hb_002309_010--Hb_000270_630 Hb_002309_010--Hb_032278_020 Hb_000160_350 Hb_000160_350 Hb_005965_030--Hb_000160_350 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060 Hb_002835_230 Hb_002835_230 Hb_004209_020--Hb_002835_230 Hb_131646_010 Hb_131646_010 Hb_004209_020--Hb_131646_010 Hb_004235_080 Hb_004235_080 Hb_004209_020--Hb_004235_080 Hb_004209_020--Hb_000923_080 Hb_004209_020--Hb_004785_100 Hb_002375_010 Hb_002375_010 Hb_004209_020--Hb_002375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01689 0.655371 1.17762 0.528647 1.63406 1.01753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.447128 0.702707 0.456045 1.12153 0.336106

CAGE analysis