Hb_002309_010

Information

Type -
Description -
Location Contig2309: 17888-22905
Sequence    

Annotation

kegg
ID rcu:RCOM_1582190
description catalytic, putative
nr
ID XP_012090183.1
description PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
swissprot
ID Q84WV9
description Glutaminyl-peptide cyclotransferase OS=Arabidopsis thaliana GN=QCT PE=1 SV=1
trembl
ID A0A067JQH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26056 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24273: 17937-22924 , PASA_asmbl_24274: 17841-19394 , PASA_asmbl_24275: 19405-22924
cDNA
(Sanger)
(ID:Location)		 019_G01.ab1: 18046-21900

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002309_010 0.0 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
2 Hb_005754_010 0.0747581202 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
3 Hb_000351_120 0.0855109805 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
4 Hb_001433_070 0.0902332442 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
5 Hb_000120_430 0.0902509094 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
6 Hb_000270_630 0.0918085367 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
7 Hb_032278_020 0.0933202653 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
8 Hb_005588_090 0.0942916117 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
9 Hb_000011_360 0.0960697607 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
10 Hb_000020_150 0.0962682418 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
11 Hb_002783_170 0.0963245809 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
12 Hb_001102_080 0.0967327242 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
13 Hb_002110_230 0.0974520247 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_001205_250 0.0980591644 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
15 Hb_000317_250 0.0981543095 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
16 Hb_000086_560 0.0984989588 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
17 Hb_001341_120 0.0992690386 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
18 Hb_116349_070 0.0994677579 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
19 Hb_000302_310 0.0995960156 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
20 Hb_000648_100 0.1001434868 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_002309_010 Hb_002309_010 Hb_005754_010 Hb_005754_010 Hb_002309_010--Hb_005754_010 Hb_000351_120 Hb_000351_120 Hb_002309_010--Hb_000351_120 Hb_001433_070 Hb_001433_070 Hb_002309_010--Hb_001433_070 Hb_000120_430 Hb_000120_430 Hb_002309_010--Hb_000120_430 Hb_000270_630 Hb_000270_630 Hb_002309_010--Hb_000270_630 Hb_032278_020 Hb_032278_020 Hb_002309_010--Hb_032278_020 Hb_005754_010--Hb_032278_020 Hb_164544_010 Hb_164544_010 Hb_005754_010--Hb_164544_010 Hb_005754_010--Hb_000120_430 Hb_001454_380 Hb_001454_380 Hb_005754_010--Hb_001454_380 Hb_103760_010 Hb_103760_010 Hb_005754_010--Hb_103760_010 Hb_063716_100 Hb_063716_100 Hb_000351_120--Hb_063716_100 Hb_000351_120--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_000351_120--Hb_005337_090 Hb_000020_150 Hb_000020_150 Hb_000351_120--Hb_000020_150 Hb_002684_040 Hb_002684_040 Hb_000351_120--Hb_002684_040 Hb_002110_230 Hb_002110_230 Hb_000351_120--Hb_002110_230 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_004631_180 Hb_004631_180 Hb_000120_430--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_000120_430--Hb_001051_080 Hb_000120_430--Hb_000020_150 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_033834_030 Hb_033834_030 Hb_000120_430--Hb_033834_030 Hb_116349_070 Hb_116349_070 Hb_000120_430--Hb_116349_070 Hb_000523_050 Hb_000523_050 Hb_000270_630--Hb_000523_050 Hb_002946_160 Hb_002946_160 Hb_000270_630--Hb_002946_160 Hb_000009_480 Hb_000009_480 Hb_000270_630--Hb_000009_480 Hb_103012_010 Hb_103012_010 Hb_000270_630--Hb_103012_010 Hb_003813_130 Hb_003813_130 Hb_000270_630--Hb_003813_130 Hb_040262_010 Hb_040262_010 Hb_000270_630--Hb_040262_010 Hb_000059_140 Hb_000059_140 Hb_032278_020--Hb_000059_140 Hb_000648_100 Hb_000648_100 Hb_032278_020--Hb_000648_100 Hb_000923_080 Hb_000923_080 Hb_032278_020--Hb_000923_080 Hb_011930_080 Hb_011930_080 Hb_032278_020--Hb_011930_080 Hb_001102_080 Hb_001102_080 Hb_032278_020--Hb_001102_080 Hb_004209_020 Hb_004209_020 Hb_032278_020--Hb_004209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.59767 3.60561 7.2602 6.24667 9.77085 9.41575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.87764 5.20394 3.05443 9.5337 3.01649

CAGE analysis