Hb_000844_070

Information

Type -
Description -
Location Contig844: 81266-84189
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03640g
description hypothetical protein
nr
ID XP_006375020.1
description hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
swissprot
ID Q28FY5
description Transmembrane protein 147 OS=Xenopus tropicalis GN=tmem147 PE=2 SV=1
trembl
ID B9MVI5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03640g PE=4 SV=1
Gene Ontology
ID GO:0005739
description transmembrane protein 147

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_C24.ab1: 81484-84132

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000844_070 0.0 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
2 Hb_000011_360 0.0873983016 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
3 Hb_005588_090 0.0887732835 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
4 Hb_000120_430 0.0889952964 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
5 Hb_116349_070 0.08910769 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
6 Hb_001347_040 0.0904235442 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
7 Hb_004209_020 0.0929940964 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
8 Hb_143395_010 0.0944155842 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
9 Hb_006688_050 0.0950926545 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
10 Hb_000923_080 0.0968333351 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
11 Hb_003464_080 0.0973517897 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
12 Hb_002309_010 0.1015352326 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
13 Hb_001780_020 0.1025425774 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000089_120 0.1038697899 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_000261_240 0.1039273861 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
16 Hb_032278_020 0.1040907064 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
17 Hb_002375_010 0.1045205507 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
18 Hb_002835_230 0.1049680856 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_000928_220 0.1059974933 - - PREDICTED: protein SCAI [Jatropha curcas]
20 Hb_002783_170 0.1070255385 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000844_070 Hb_000844_070 Hb_000011_360 Hb_000011_360 Hb_000844_070--Hb_000011_360 Hb_005588_090 Hb_005588_090 Hb_000844_070--Hb_005588_090 Hb_000120_430 Hb_000120_430 Hb_000844_070--Hb_000120_430 Hb_116349_070 Hb_116349_070 Hb_000844_070--Hb_116349_070 Hb_001347_040 Hb_001347_040 Hb_000844_070--Hb_001347_040 Hb_004209_020 Hb_004209_020 Hb_000844_070--Hb_004209_020 Hb_032278_020 Hb_032278_020 Hb_000011_360--Hb_032278_020 Hb_018790_070 Hb_018790_070 Hb_000011_360--Hb_018790_070 Hb_002309_010 Hb_002309_010 Hb_000011_360--Hb_002309_010 Hb_005965_030 Hb_005965_030 Hb_000011_360--Hb_005965_030 Hb_000011_360--Hb_004209_020 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_005588_090--Hb_116349_070 Hb_005289_040 Hb_005289_040 Hb_005588_090--Hb_005289_040 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160 Hb_004631_180 Hb_004631_180 Hb_000120_430--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_000120_430--Hb_001051_080 Hb_000020_150 Hb_000020_150 Hb_000120_430--Hb_000020_150 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_033834_030 Hb_033834_030 Hb_000120_430--Hb_033834_030 Hb_000120_430--Hb_116349_070 Hb_116349_070--Hb_000089_120 Hb_116349_070--Hb_004267_040 Hb_000120_280 Hb_000120_280 Hb_116349_070--Hb_000120_280 Hb_116349_070--Hb_000617_100 Hb_131646_010 Hb_131646_010 Hb_001347_040--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_001347_040--Hb_143395_010 Hb_001377_070 Hb_001377_070 Hb_001347_040--Hb_001377_070 Hb_003124_220 Hb_003124_220 Hb_001347_040--Hb_003124_220 Hb_000256_190 Hb_000256_190 Hb_001347_040--Hb_000256_190 Hb_002078_110 Hb_002078_110 Hb_001347_040--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_004209_020--Hb_002835_230 Hb_004209_020--Hb_131646_010 Hb_004235_080 Hb_004235_080 Hb_004209_020--Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_004209_020--Hb_000923_080 Hb_004209_020--Hb_004785_100 Hb_002375_010 Hb_002375_010 Hb_004209_020--Hb_002375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8212 11.1451 12.8687 12.5662 23.1173 16.0505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.39389 12.1059 7.11205 16.0188 5.61713

CAGE analysis