Hb_000749_110

Information

Type -
Description -
Location Contig749: 102432-109477
Sequence    

Annotation

kegg
ID rcu:RCOM_1124350
description hypothetical protein
nr
ID XP_012084940.1
description PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
swissprot
ID Q8BY89
description Choline transporter-like protein 2 OS=Mus musculus GN=Slc44a2 PE=1 SV=2
trembl
ID A0A067JSV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20971 PE=4 SV=1
Gene Ontology
ID GO:0005886
description choline transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56786: 102434-109414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_110 0.0 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
2 Hb_000037_110 0.1401650782 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
3 Hb_006483_010 0.1546581035 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_000366_190 0.1575877817 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
5 Hb_000755_080 0.1628861029 - - hypothetical protein RCOM_1016710 [Ricinus communis]
6 Hb_000261_520 0.1642518022 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
7 Hb_002044_050 0.1677962637 - - -
8 Hb_020805_010 0.1684192031 - - protein with unknown function [Ricinus communis]
9 Hb_001390_010 0.169921818 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
10 Hb_004635_130 0.173138827 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
11 Hb_006882_010 0.1775661535 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
12 Hb_000021_040 0.1782632538 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
13 Hb_001247_200 0.1789076847 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
14 Hb_000027_030 0.1797217922 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_017711_020 0.1864636181 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
16 Hb_022250_110 0.1868301871 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
17 Hb_000454_190 0.1883462705 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
18 Hb_001300_070 0.1887600173 - - OTU domain-containing protein 6B, putative [Ricinus communis]
19 Hb_002070_070 0.1887864143 - - ATP binding protein, putative [Ricinus communis]
20 Hb_008595_010 0.1895791381 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000749_110 Hb_000749_110 Hb_000037_110 Hb_000037_110 Hb_000749_110--Hb_000037_110 Hb_006483_010 Hb_006483_010 Hb_000749_110--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_000749_110--Hb_000366_190 Hb_000755_080 Hb_000755_080 Hb_000749_110--Hb_000755_080 Hb_000261_520 Hb_000261_520 Hb_000749_110--Hb_000261_520 Hb_002044_050 Hb_002044_050 Hb_000749_110--Hb_002044_050 Hb_000768_190 Hb_000768_190 Hb_000037_110--Hb_000768_190 Hb_000021_040 Hb_000021_040 Hb_000037_110--Hb_000021_040 Hb_008595_010 Hb_008595_010 Hb_000037_110--Hb_008595_010 Hb_022250_110 Hb_022250_110 Hb_000037_110--Hb_022250_110 Hb_000029_320 Hb_000029_320 Hb_000037_110--Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000037_110--Hb_002070_070 Hb_006483_010--Hb_000366_190 Hb_015026_060 Hb_015026_060 Hb_006483_010--Hb_015026_060 Hb_050686_010 Hb_050686_010 Hb_006483_010--Hb_050686_010 Hb_006483_010--Hb_000261_520 Hb_005271_080 Hb_005271_080 Hb_006483_010--Hb_005271_080 Hb_009119_030 Hb_009119_030 Hb_000366_190--Hb_009119_030 Hb_020805_010 Hb_020805_010 Hb_000366_190--Hb_020805_010 Hb_000062_030 Hb_000062_030 Hb_000366_190--Hb_000062_030 Hb_009485_020 Hb_009485_020 Hb_000366_190--Hb_009485_020 Hb_002320_070 Hb_002320_070 Hb_000366_190--Hb_002320_070 Hb_000755_080--Hb_000261_520 Hb_000365_140 Hb_000365_140 Hb_000755_080--Hb_000365_140 Hb_005895_040 Hb_005895_040 Hb_000755_080--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000755_080--Hb_004656_060 Hb_000375_030 Hb_000375_030 Hb_000755_080--Hb_000375_030 Hb_000640_220 Hb_000640_220 Hb_000755_080--Hb_000640_220 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000261_520--Hb_000640_220 Hb_000261_520--Hb_005895_040 Hb_004376_030 Hb_004376_030 Hb_000261_520--Hb_004376_030 Hb_007426_150 Hb_007426_150 Hb_002044_050--Hb_007426_150 Hb_004875_030 Hb_004875_030 Hb_002044_050--Hb_004875_030 Hb_004223_290 Hb_004223_290 Hb_002044_050--Hb_004223_290 Hb_000209_070 Hb_000209_070 Hb_002044_050--Hb_000209_070 Hb_001366_210 Hb_001366_210 Hb_002044_050--Hb_001366_210 Hb_005731_090 Hb_005731_090 Hb_002044_050--Hb_005731_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6282 7.19065 5.5428 15.7057 54.1452 21.4972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.8346 1.76341 6.63398 10.5362 9.93393

CAGE analysis