Hb_002039_050

Information

Type -
Description -
Location Contig2039: 100785-102326
Sequence    

Annotation

kegg
ID rcu:RCOM_0852480
description Spotted leaf protein, putative
nr
ID XP_012082241.1
description PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
swissprot
ID Q9FL17
description U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2
trembl
ID A0A067LL08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09659 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20886: 101829-102382 , PASA_asmbl_20887: 102386-102558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002039_050 0.0 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
2 Hb_011164_010 0.1778286743 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
3 Hb_002999_060 0.1792186227 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
4 Hb_006745_010 0.180368169 - - PREDICTED: uncharacterized protein LOC105640095 [Jatropha curcas]
5 Hb_000062_030 0.1819826861 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
6 Hb_001504_090 0.2033801019 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
7 Hb_013394_060 0.2053433089 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
8 Hb_020805_010 0.2148046994 - - protein with unknown function [Ricinus communis]
9 Hb_008147_050 0.2164154309 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
10 Hb_000122_060 0.2180771894 - - PREDICTED: protein LURP-one-related 14 [Jatropha curcas]
11 Hb_002965_030 0.2194352908 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
12 Hb_001882_110 0.2237702494 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_000720_070 0.2286069769 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
14 Hb_111876_010 0.2338913568 - - Auxin response factor, putative [Ricinus communis]
15 Hb_000366_190 0.2344593839 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
16 Hb_004374_130 0.2360485139 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
17 Hb_004296_010 0.236055269 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
18 Hb_003125_140 0.2361752846 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
19 Hb_000505_110 0.2370192461 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
20 Hb_001269_310 0.239182073 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]

Gene co-expression network

sample Hb_002039_050 Hb_002039_050 Hb_011164_010 Hb_011164_010 Hb_002039_050--Hb_011164_010 Hb_002999_060 Hb_002999_060 Hb_002039_050--Hb_002999_060 Hb_006745_010 Hb_006745_010 Hb_002039_050--Hb_006745_010 Hb_000062_030 Hb_000062_030 Hb_002039_050--Hb_000062_030 Hb_001504_090 Hb_001504_090 Hb_002039_050--Hb_001504_090 Hb_013394_060 Hb_013394_060 Hb_002039_050--Hb_013394_060 Hb_008147_050 Hb_008147_050 Hb_011164_010--Hb_008147_050 Hb_011164_010--Hb_006745_010 Hb_011164_010--Hb_000062_030 Hb_000505_110 Hb_000505_110 Hb_011164_010--Hb_000505_110 Hb_027380_230 Hb_027380_230 Hb_011164_010--Hb_027380_230 Hb_002999_060--Hb_013394_060 Hb_002965_030 Hb_002965_030 Hb_002999_060--Hb_002965_030 Hb_030827_060 Hb_030827_060 Hb_002999_060--Hb_030827_060 Hb_000720_070 Hb_000720_070 Hb_002999_060--Hb_000720_070 Hb_000483_380 Hb_000483_380 Hb_002999_060--Hb_000483_380 Hb_000422_110 Hb_000422_110 Hb_002999_060--Hb_000422_110 Hb_006745_010--Hb_030827_060 Hb_006745_010--Hb_000422_110 Hb_001307_010 Hb_001307_010 Hb_006745_010--Hb_001307_010 Hb_004648_070 Hb_004648_070 Hb_006745_010--Hb_004648_070 Hb_000979_240 Hb_000979_240 Hb_006745_010--Hb_000979_240 Hb_006745_010--Hb_002999_060 Hb_000062_030--Hb_000505_110 Hb_000366_190 Hb_000366_190 Hb_000062_030--Hb_000366_190 Hb_000062_030--Hb_008147_050 Hb_001031_040 Hb_001031_040 Hb_000062_030--Hb_001031_040 Hb_013818_030 Hb_013818_030 Hb_000062_030--Hb_013818_030 Hb_186857_010 Hb_186857_010 Hb_000062_030--Hb_186857_010 Hb_001504_090--Hb_008147_050 Hb_010254_020 Hb_010254_020 Hb_001504_090--Hb_010254_020 Hb_000421_130 Hb_000421_130 Hb_001504_090--Hb_000421_130 Hb_000001_160 Hb_000001_160 Hb_001504_090--Hb_000001_160 Hb_001504_090--Hb_000366_190 Hb_013394_060--Hb_000483_380 Hb_013394_060--Hb_002965_030 Hb_013394_060--Hb_000720_070 Hb_013394_060--Hb_030827_060 Hb_000538_010 Hb_000538_010 Hb_013394_060--Hb_000538_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30975 13.1503 4.2489 14.8757 24.3205 7.74829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33117 2.45159 0.984838 1.07318 1.49554

CAGE analysis