Hb_003895_030

Information

Type -
Description -
Location Contig3895: 63092-70981
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39040: 68358-69206 , PASA_asmbl_39045: 69720-70238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003895_030 0.0 - - -
2 Hb_002370_040 0.1490671601 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
3 Hb_100525_010 0.1623204093 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
4 Hb_007481_030 0.1658578314 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
5 Hb_002742_080 0.169255381 - - unknown [Populus trichocarpa]
6 Hb_004935_080 0.184259986 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
7 Hb_002320_070 0.1857033644 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012404_070 0.1874622439 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
9 Hb_000136_190 0.1883279043 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
10 Hb_001508_020 0.1884895606 - - myosin vIII, putative [Ricinus communis]
11 Hb_056506_020 0.1922273715 - - PREDICTED: uncharacterized protein LOC105647588 [Jatropha curcas]
12 Hb_002902_020 0.1931610231 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
13 Hb_004657_090 0.19435568 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
14 Hb_002066_080 0.1967855202 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
15 Hb_003814_030 0.1977326914 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
16 Hb_003376_260 0.2002543188 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
17 Hb_011932_010 0.2011991539 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
18 Hb_008246_030 0.2025053913 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
19 Hb_167381_020 0.203143244 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
20 Hb_008029_020 0.2041368968 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]

Gene co-expression network

sample Hb_003895_030 Hb_003895_030 Hb_002370_040 Hb_002370_040 Hb_003895_030--Hb_002370_040 Hb_100525_010 Hb_100525_010 Hb_003895_030--Hb_100525_010 Hb_007481_030 Hb_007481_030 Hb_003895_030--Hb_007481_030 Hb_002742_080 Hb_002742_080 Hb_003895_030--Hb_002742_080 Hb_004935_080 Hb_004935_080 Hb_003895_030--Hb_004935_080 Hb_002320_070 Hb_002320_070 Hb_003895_030--Hb_002320_070 Hb_002370_040--Hb_007481_030 Hb_012395_080 Hb_012395_080 Hb_002370_040--Hb_012395_080 Hb_000136_190 Hb_000136_190 Hb_002370_040--Hb_000136_190 Hb_007223_010 Hb_007223_010 Hb_002370_040--Hb_007223_010 Hb_002370_040--Hb_100525_010 Hb_097646_010 Hb_097646_010 Hb_100525_010--Hb_097646_010 Hb_000571_150 Hb_000571_150 Hb_100525_010--Hb_000571_150 Hb_100525_010--Hb_002742_080 Hb_003376_260 Hb_003376_260 Hb_100525_010--Hb_003376_260 Hb_143960_010 Hb_143960_010 Hb_007481_030--Hb_143960_010 Hb_007481_030--Hb_007223_010 Hb_167381_020 Hb_167381_020 Hb_007481_030--Hb_167381_020 Hb_000120_520 Hb_000120_520 Hb_007481_030--Hb_000120_520 Hb_002997_160 Hb_002997_160 Hb_007481_030--Hb_002997_160 Hb_001052_040 Hb_001052_040 Hb_002742_080--Hb_001052_040 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_000261_290 Hb_000261_290 Hb_002742_080--Hb_000261_290 Hb_128376_010 Hb_128376_010 Hb_002742_080--Hb_128376_010 Hb_002742_080--Hb_002320_070 Hb_070469_010 Hb_070469_010 Hb_004935_080--Hb_070469_010 Hb_004935_080--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_004935_080--Hb_000130_190 Hb_003038_220 Hb_003038_220 Hb_004935_080--Hb_003038_220 Hb_013358_100 Hb_013358_100 Hb_004935_080--Hb_013358_100 Hb_009393_200 Hb_009393_200 Hb_004935_080--Hb_009393_200 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_009119_030 Hb_009119_030 Hb_002320_070--Hb_009119_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9178 2.80746 2.09164 1.77146 2.02025 4.02044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.621168 0.436913 0.433364 0.947694

CAGE analysis