Hb_005460_030

Information

Type -
Description -
Location Contig5460: 52673-53935
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11310g
description POPTRDRAFT_557309; hypothetical protein
nr
ID XP_012069326.1
description PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
swissprot
ID Q67YI6
description RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2
trembl
ID A0A067LG04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10038 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl65

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47978: 52169-54316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005460_030 0.0 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
2 Hb_004143_070 0.1346276321 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000181_310 0.135575135 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
4 Hb_002159_030 0.140986687 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
5 Hb_030627_040 0.1446080709 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
6 Hb_004324_240 0.1452721235 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
7 Hb_003216_120 0.1524937212 - - PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
8 Hb_007757_100 0.1540301027 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
9 Hb_002249_120 0.1541850605 - - RNA-binding protein, putative [Ricinus communis]
10 Hb_000497_230 0.1558821542 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
11 Hb_003580_040 0.155975925 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
12 Hb_002159_040 0.1567142927 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
13 Hb_018954_020 0.1593629721 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
14 Hb_000243_320 0.1599701425 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001268_210 0.1604036963 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000540_140 0.1631349749 - - zinc binding dehydrogenase, putative [Ricinus communis]
17 Hb_009767_090 0.1638930449 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000566_100 0.1646428405 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
19 Hb_003436_050 0.1663764036 - - arf gtpase-activating protein, putative [Ricinus communis]
20 Hb_006882_010 0.1667258182 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]

Gene co-expression network

sample Hb_005460_030 Hb_005460_030 Hb_004143_070 Hb_004143_070 Hb_005460_030--Hb_004143_070 Hb_000181_310 Hb_000181_310 Hb_005460_030--Hb_000181_310 Hb_002159_030 Hb_002159_030 Hb_005460_030--Hb_002159_030 Hb_030627_040 Hb_030627_040 Hb_005460_030--Hb_030627_040 Hb_004324_240 Hb_004324_240 Hb_005460_030--Hb_004324_240 Hb_003216_120 Hb_003216_120 Hb_005460_030--Hb_003216_120 Hb_046615_020 Hb_046615_020 Hb_004143_070--Hb_046615_020 Hb_002493_090 Hb_002493_090 Hb_004143_070--Hb_002493_090 Hb_004143_070--Hb_000181_310 Hb_002159_040 Hb_002159_040 Hb_004143_070--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_004143_070--Hb_000244_240 Hb_033594_020 Hb_033594_020 Hb_004143_070--Hb_033594_020 Hb_007757_100 Hb_007757_100 Hb_000181_310--Hb_007757_100 Hb_003666_050 Hb_003666_050 Hb_000181_310--Hb_003666_050 Hb_003580_040 Hb_003580_040 Hb_000181_310--Hb_003580_040 Hb_000540_140 Hb_000540_140 Hb_000181_310--Hb_000540_140 Hb_009913_050 Hb_009913_050 Hb_000181_310--Hb_009913_050 Hb_002159_030--Hb_002159_040 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_002159_030--Hb_000244_240 Hb_002159_030--Hb_004143_070 Hb_001390_010 Hb_001390_010 Hb_030627_040--Hb_001390_010 Hb_000040_050 Hb_000040_050 Hb_030627_040--Hb_000040_050 Hb_030627_040--Hb_006882_010 Hb_030627_040--Hb_002159_030 Hb_003436_050 Hb_003436_050 Hb_030627_040--Hb_003436_050 Hb_018954_020 Hb_018954_020 Hb_004324_240--Hb_018954_020 Hb_001916_120 Hb_001916_120 Hb_004324_240--Hb_001916_120 Hb_004324_240--Hb_002159_030 Hb_000016_030 Hb_000016_030 Hb_004324_240--Hb_000016_030 Hb_000215_260 Hb_000215_260 Hb_004324_240--Hb_000215_260 Hb_004899_030 Hb_004899_030 Hb_003216_120--Hb_004899_030 Hb_000024_070 Hb_000024_070 Hb_003216_120--Hb_000024_070 Hb_000809_210 Hb_000809_210 Hb_003216_120--Hb_000809_210 Hb_028707_090 Hb_028707_090 Hb_003216_120--Hb_028707_090 Hb_000363_380 Hb_000363_380 Hb_003216_120--Hb_000363_380 Hb_008246_030 Hb_008246_030 Hb_003216_120--Hb_008246_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.3333 11.9703 15.6414 19.803 82.0962 64.3516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8879 7.41698 11.6485 5.4922 35.6454

CAGE analysis