Hb_000215_260

Information

Type -
Description -
Location Contig215: 198554-199816
Sequence    

Annotation

kegg
ID rcu:RCOM_1048870
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012076834.1
description PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
swissprot
ID Q9LHF1
description Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=2 SV=1
trembl
ID B9RKF0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1048870 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat extensin-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_260 0.0 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
2 Hb_000329_420 0.1398878433 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
3 Hb_023327_030 0.1533636072 - - osmotin-like protein [Hevea brasiliensis]
4 Hb_000497_230 0.1703938332 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
5 Hb_004324_240 0.1719345098 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
6 Hb_063716_010 0.1731856898 - - phopholipase d alpha, putative [Ricinus communis]
7 Hb_015026_060 0.1741055468 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
8 Hb_018954_020 0.1746625105 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
9 Hb_002159_030 0.1751104919 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
10 Hb_000199_080 0.1756886928 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003243_020 0.1823792157 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
12 Hb_000056_120 0.1830121998 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_005271_080 0.185907656 - - receptor kinase, putative [Ricinus communis]
14 Hb_001450_100 0.1879061651 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
15 Hb_002235_130 0.1905242226 - - conserved hypothetical protein [Ricinus communis]
16 Hb_099698_010 0.1907293729 - - -
17 Hb_001279_330 0.1921035862 - - Protein bem46, putative [Ricinus communis]
18 Hb_002159_040 0.1930222325 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
19 Hb_079326_010 0.1945957337 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
20 Hb_007757_100 0.1949614273 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000215_260 Hb_000215_260 Hb_000329_420 Hb_000329_420 Hb_000215_260--Hb_000329_420 Hb_023327_030 Hb_023327_030 Hb_000215_260--Hb_023327_030 Hb_000497_230 Hb_000497_230 Hb_000215_260--Hb_000497_230 Hb_004324_240 Hb_004324_240 Hb_000215_260--Hb_004324_240 Hb_063716_010 Hb_063716_010 Hb_000215_260--Hb_063716_010 Hb_015026_060 Hb_015026_060 Hb_000215_260--Hb_015026_060 Hb_001916_120 Hb_001916_120 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000252_090 Hb_000252_090 Hb_000329_420--Hb_000252_090 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030 Hb_002475_050 Hb_002475_050 Hb_023327_030--Hb_002475_050 Hb_005000_270 Hb_005000_270 Hb_023327_030--Hb_005000_270 Hb_000256_270 Hb_000256_270 Hb_023327_030--Hb_000256_270 Hb_079326_010 Hb_079326_010 Hb_023327_030--Hb_079326_010 Hb_002918_070 Hb_002918_070 Hb_023327_030--Hb_002918_070 Hb_003716_020 Hb_003716_020 Hb_023327_030--Hb_003716_020 Hb_018954_020 Hb_018954_020 Hb_000497_230--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_000497_230--Hb_000197_210 Hb_008406_140 Hb_008406_140 Hb_000497_230--Hb_008406_140 Hb_001279_330 Hb_001279_330 Hb_000497_230--Hb_001279_330 Hb_004143_070 Hb_004143_070 Hb_000497_230--Hb_004143_070 Hb_002159_040 Hb_002159_040 Hb_000497_230--Hb_002159_040 Hb_005460_030 Hb_005460_030 Hb_004324_240--Hb_005460_030 Hb_004324_240--Hb_018954_020 Hb_004324_240--Hb_001916_120 Hb_002159_030 Hb_002159_030 Hb_004324_240--Hb_002159_030 Hb_000016_030 Hb_000016_030 Hb_004324_240--Hb_000016_030 Hb_011282_030 Hb_011282_030 Hb_063716_010--Hb_011282_030 Hb_000012_150 Hb_000012_150 Hb_063716_010--Hb_000012_150 Hb_063716_010--Hb_079326_010 Hb_011644_020 Hb_011644_020 Hb_063716_010--Hb_011644_020 Hb_001846_060 Hb_001846_060 Hb_063716_010--Hb_001846_060 Hb_063716_010--Hb_000497_230 Hb_083043_010 Hb_083043_010 Hb_015026_060--Hb_083043_010 Hb_000424_230 Hb_000424_230 Hb_015026_060--Hb_000424_230 Hb_015026_060--Hb_001279_330 Hb_000613_100 Hb_000613_100 Hb_015026_060--Hb_000613_100 Hb_005368_010 Hb_005368_010 Hb_015026_060--Hb_005368_010 Hb_001040_120 Hb_001040_120 Hb_015026_060--Hb_001040_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.1109 2.08995 5.96345 24.2163 52.361 58.8711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.14578 2.7626 9.57641 4.57884 4.23756

CAGE analysis