Hb_000329_420

Information

Type -
Description -
Location Contig329: 264783-265592
Sequence    

Annotation

kegg
ID rcu:RCOM_1609920
description Nuc-1 negative regulatory protein preg, putative
nr
ID XP_002511648.1
description Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
swissprot
ID Q9M205
description Cyclin-U2-2 OS=Arabidopsis thaliana GN=CYCU2-2 PE=1 SV=1
trembl
ID B9RD59
description Nuc-1 negative regulatory protein preg, putative OS=Ricinus communis GN=RCOM_1609920 PE=4 SV=1
Gene Ontology
ID GO:0019901
description nuc-1 negative regulatory protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34541: 264710-265412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_420 0.0 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
2 Hb_000215_260 0.1398878433 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
3 Hb_001916_120 0.1654167541 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
4 Hb_000056_120 0.1662054092 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_000252_090 0.1673969224 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
6 Hb_000056_230 0.170309352 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
7 Hb_002265_030 0.1718240626 - - PREDICTED: LOW QUALITY PROTEIN: probable calcium-binding protein CML49-like [Glycine max]
8 Hb_128496_010 0.1849152567 - - unnamed protein product [Vitis vinifera]
9 Hb_050686_010 0.1907097074 - - conserved hypothetical protein [Ricinus communis]
10 Hb_120662_010 0.191798831 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
11 Hb_004324_240 0.1924002032 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
12 Hb_001138_010 0.1928523876 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001935_190 0.1947795763 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
14 Hb_054885_010 0.2033870905 - - -
15 Hb_002235_130 0.2080610152 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001916_130 0.2117133314 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
17 Hb_000605_010 0.212119594 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_001677_050 0.2131127469 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
19 Hb_000497_230 0.2155329128 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
20 Hb_107039_010 0.2156708036 - - Quinone oxidoreductase-like protein, chloroplastic [Glycine soja]

Gene co-expression network

sample Hb_000329_420 Hb_000329_420 Hb_000215_260 Hb_000215_260 Hb_000329_420--Hb_000215_260 Hb_001916_120 Hb_001916_120 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000252_090 Hb_000252_090 Hb_000329_420--Hb_000252_090 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030 Hb_023327_030 Hb_023327_030 Hb_000215_260--Hb_023327_030 Hb_000497_230 Hb_000497_230 Hb_000215_260--Hb_000497_230 Hb_004324_240 Hb_004324_240 Hb_000215_260--Hb_004324_240 Hb_063716_010 Hb_063716_010 Hb_000215_260--Hb_063716_010 Hb_015026_060 Hb_015026_060 Hb_000215_260--Hb_015026_060 Hb_001138_010 Hb_001138_010 Hb_001916_120--Hb_001138_010 Hb_001916_120--Hb_000252_090 Hb_001277_410 Hb_001277_410 Hb_001916_120--Hb_001277_410 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_000365_350 Hb_000365_350 Hb_000056_120--Hb_000365_350 Hb_000565_020 Hb_000565_020 Hb_000056_120--Hb_000565_020 Hb_000156_030 Hb_000156_030 Hb_000056_120--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_000056_120--Hb_061256_030 Hb_001825_010 Hb_001825_010 Hb_000056_120--Hb_001825_010 Hb_000566_140 Hb_000566_140 Hb_000056_120--Hb_000566_140 Hb_000252_090--Hb_001138_010 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230 Hb_128496_010 Hb_128496_010 Hb_000056_230--Hb_128496_010 Hb_004218_070 Hb_004218_070 Hb_000056_230--Hb_004218_070 Hb_099046_010 Hb_099046_010 Hb_000056_230--Hb_099046_010 Hb_004662_010 Hb_004662_010 Hb_000056_230--Hb_004662_010 Hb_008406_140 Hb_008406_140 Hb_000056_230--Hb_008406_140 Hb_005054_050 Hb_005054_050 Hb_002265_030--Hb_005054_050 Hb_002265_030--Hb_000215_260 Hb_002265_030--Hb_004324_240 Hb_001450_100 Hb_001450_100 Hb_002265_030--Hb_001450_100 Hb_000522_140 Hb_000522_140 Hb_002265_030--Hb_000522_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1973 2.62033 2.37819 18.1622 27.4555 26.2485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82278 2.09589 4.30061 0.876995 1.46703

CAGE analysis