Hb_005054_050

Information

Type -
Description -
Location Contig5054: 49604-53484
Sequence    

Annotation

kegg
ID rcu:RCOM_0498280
description hypothetical protein
nr
ID XP_012091121.1
description PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067LJK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01340 PE=4 SV=1
Gene Ontology
ID GO:0016740
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46050: 53010-53365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_050 0.0 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
2 Hb_002265_030 0.1707201326 - - PREDICTED: LOW QUALITY PROTEIN: probable calcium-binding protein CML49-like [Glycine max]
3 Hb_000215_260 0.1956959326 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
4 Hb_001621_160 0.219393727 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_000329_420 0.2246339416 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
6 Hb_120662_010 0.2283204459 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
7 Hb_002374_560 0.2426567558 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
8 Hb_005928_080 0.2450813596 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
9 Hb_001329_260 0.2470555616 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
10 Hb_050686_010 0.2504391893 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004324_240 0.2530169955 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
12 Hb_002518_300 0.2558775799 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
13 Hb_001504_090 0.2631638116 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_006483_010 0.2667433815 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_002783_250 0.2703775917 - - gibberellin-regulated protein 1-like precursor [Jatropha curcas]
16 Hb_002326_060 0.2723636911 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
17 Hb_004994_340 0.2741696153 - - -
18 Hb_007547_050 0.274956022 - - Auxin response factor 9 [Aegilops tauschii]
19 Hb_001450_100 0.2761517258 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
20 Hb_003243_020 0.2790852153 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]

Gene co-expression network

sample Hb_005054_050 Hb_005054_050 Hb_002265_030 Hb_002265_030 Hb_005054_050--Hb_002265_030 Hb_000215_260 Hb_000215_260 Hb_005054_050--Hb_000215_260 Hb_001621_160 Hb_001621_160 Hb_005054_050--Hb_001621_160 Hb_000329_420 Hb_000329_420 Hb_005054_050--Hb_000329_420 Hb_120662_010 Hb_120662_010 Hb_005054_050--Hb_120662_010 Hb_002374_560 Hb_002374_560 Hb_005054_050--Hb_002374_560 Hb_002265_030--Hb_000329_420 Hb_002265_030--Hb_000215_260 Hb_004324_240 Hb_004324_240 Hb_002265_030--Hb_004324_240 Hb_001450_100 Hb_001450_100 Hb_002265_030--Hb_001450_100 Hb_000522_140 Hb_000522_140 Hb_002265_030--Hb_000522_140 Hb_000215_260--Hb_000329_420 Hb_023327_030 Hb_023327_030 Hb_000215_260--Hb_023327_030 Hb_000497_230 Hb_000497_230 Hb_000215_260--Hb_000497_230 Hb_000215_260--Hb_004324_240 Hb_063716_010 Hb_063716_010 Hb_000215_260--Hb_063716_010 Hb_015026_060 Hb_015026_060 Hb_000215_260--Hb_015026_060 Hb_001621_160--Hb_002374_560 Hb_001504_090 Hb_001504_090 Hb_001621_160--Hb_001504_090 Hb_020156_060 Hb_020156_060 Hb_001621_160--Hb_020156_060 Hb_000421_130 Hb_000421_130 Hb_001621_160--Hb_000421_130 Hb_005565_080 Hb_005565_080 Hb_001621_160--Hb_005565_080 Hb_001916_120 Hb_001916_120 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000252_090 Hb_000252_090 Hb_000329_420--Hb_000252_090 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_001935_190 Hb_001935_190 Hb_120662_010--Hb_001935_190 Hb_003043_060 Hb_003043_060 Hb_120662_010--Hb_003043_060 Hb_030627_040 Hb_030627_040 Hb_120662_010--Hb_030627_040 Hb_050686_010 Hb_050686_010 Hb_120662_010--Hb_050686_010 Hb_120662_010--Hb_000329_420 Hb_001901_080 Hb_001901_080 Hb_120662_010--Hb_001901_080 Hb_000001_160 Hb_000001_160 Hb_002374_560--Hb_000001_160 Hb_002326_060 Hb_002326_060 Hb_002374_560--Hb_002326_060 Hb_047661_010 Hb_047661_010 Hb_002374_560--Hb_047661_010 Hb_001159_210 Hb_001159_210 Hb_002374_560--Hb_001159_210 Hb_002518_300 Hb_002518_300 Hb_002374_560--Hb_002518_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37256 0.0324842 0.13195 1.96248 3.92961 2.14789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131346 0.0413365 0.234228 0.0576404 0.260941

CAGE analysis