Hb_005565_080

Information

Type -
Description -
Location Contig5565: 41753-42544
Sequence    

Annotation

kegg
ID rcu:RCOM_0522390
description hypothetical protein
nr
ID XP_012071030.1
description PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01046 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48554: 41726-42598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005565_080 0.0 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
2 Hb_000749_110 0.2364887549 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
3 Hb_000318_260 0.2522446852 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
4 Hb_005928_080 0.25308674 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
5 Hb_001621_160 0.2572134127 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_002518_300 0.2634866981 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
7 Hb_001329_260 0.2734343572 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
8 Hb_000062_380 0.276001969 - - PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
9 Hb_003580_040 0.2842104483 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
10 Hb_003320_030 0.2858962319 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001196_050 0.2862626176 - - -
12 Hb_004648_040 0.2869690359 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
13 Hb_007416_370 0.2872834947 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000001_160 0.2874605018 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
15 Hb_001390_010 0.2887126769 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
16 Hb_017711_020 0.2907108735 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
17 Hb_004635_080 0.2907323036 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_005271_080 0.2911750198 - - receptor kinase, putative [Ricinus communis]
19 Hb_006816_120 0.2927537711 - - Nicotianamine synthase, putative [Ricinus communis]
20 Hb_000940_040 0.2936134713 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005565_080 Hb_005565_080 Hb_000749_110 Hb_000749_110 Hb_005565_080--Hb_000749_110 Hb_000318_260 Hb_000318_260 Hb_005565_080--Hb_000318_260 Hb_005928_080 Hb_005928_080 Hb_005565_080--Hb_005928_080 Hb_001621_160 Hb_001621_160 Hb_005565_080--Hb_001621_160 Hb_002518_300 Hb_002518_300 Hb_005565_080--Hb_002518_300 Hb_001329_260 Hb_001329_260 Hb_005565_080--Hb_001329_260 Hb_000037_110 Hb_000037_110 Hb_000749_110--Hb_000037_110 Hb_006483_010 Hb_006483_010 Hb_000749_110--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_000749_110--Hb_000366_190 Hb_000755_080 Hb_000755_080 Hb_000749_110--Hb_000755_080 Hb_000261_520 Hb_000261_520 Hb_000749_110--Hb_000261_520 Hb_002044_050 Hb_002044_050 Hb_000749_110--Hb_002044_050 Hb_004712_110 Hb_004712_110 Hb_000318_260--Hb_004712_110 Hb_000987_050 Hb_000987_050 Hb_000318_260--Hb_000987_050 Hb_000424_160 Hb_000424_160 Hb_000318_260--Hb_000424_160 Hb_000317_080 Hb_000317_080 Hb_000318_260--Hb_000317_080 Hb_000088_030 Hb_000088_030 Hb_000318_260--Hb_000088_030 Hb_000976_180 Hb_000976_180 Hb_000318_260--Hb_000976_180 Hb_005271_080 Hb_005271_080 Hb_005928_080--Hb_005271_080 Hb_051017_010 Hb_051017_010 Hb_005928_080--Hb_051017_010 Hb_001247_170 Hb_001247_170 Hb_005928_080--Hb_001247_170 Hb_001279_330 Hb_001279_330 Hb_005928_080--Hb_001279_330 Hb_005928_080--Hb_000261_520 Hb_000175_490 Hb_000175_490 Hb_005928_080--Hb_000175_490 Hb_005054_050 Hb_005054_050 Hb_001621_160--Hb_005054_050 Hb_002374_560 Hb_002374_560 Hb_001621_160--Hb_002374_560 Hb_001504_090 Hb_001504_090 Hb_001621_160--Hb_001504_090 Hb_020156_060 Hb_020156_060 Hb_001621_160--Hb_020156_060 Hb_000421_130 Hb_000421_130 Hb_001621_160--Hb_000421_130 Hb_003243_020 Hb_003243_020 Hb_002518_300--Hb_003243_020 Hb_007416_370 Hb_007416_370 Hb_002518_300--Hb_007416_370 Hb_099698_010 Hb_099698_010 Hb_002518_300--Hb_099698_010 Hb_008406_130 Hb_008406_130 Hb_002518_300--Hb_008406_130 Hb_000040_050 Hb_000040_050 Hb_002518_300--Hb_000040_050 Hb_002518_300--Hb_004712_110 Hb_003320_030 Hb_003320_030 Hb_001329_260--Hb_003320_030 Hb_004650_080 Hb_004650_080 Hb_001329_260--Hb_004650_080 Hb_001196_050 Hb_001196_050 Hb_001329_260--Hb_001196_050 Hb_000857_050 Hb_000857_050 Hb_001329_260--Hb_000857_050 Hb_098315_110 Hb_098315_110 Hb_001329_260--Hb_098315_110 Hb_000331_610 Hb_000331_610 Hb_001329_260--Hb_000331_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7038 4.12235 5.82501 27.2411 193.076 59.227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.8519 3.87196 6.02558 3.26619 31.382

CAGE analysis