Hb_000987_050

Information

Type transcription factor
Description TF Family: ERF
Location Contig987: 51867-54644
Sequence    

Annotation

kegg
ID rcu:RCOM_0848300
description hypothetical protein
nr
ID XP_002526680.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0JQF7
description Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1
trembl
ID B9SL11
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0848300 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dre-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64661: 54190-54392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_050 0.0 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
2 Hb_053543_010 0.0797719506 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000317_080 0.1253521811 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
4 Hb_010931_110 0.1260858689 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_130177_010 0.1286870473 - - hypothetical protein RCOM_0897890 [Ricinus communis]
6 Hb_043959_010 0.1355695342 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
7 Hb_098315_110 0.1445934566 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010368_070 0.1596212908 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001268_230 0.1603709353 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_002903_120 0.1616153516 - - -
11 Hb_004712_110 0.1717191317 - - 30S ribosomal protein S10, putative [Ricinus communis]
12 Hb_000318_260 0.1738065264 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
13 Hb_000173_210 0.1764546662 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
14 Hb_001628_110 0.1803356754 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
15 Hb_000300_530 0.1813544118 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
16 Hb_002172_030 0.1817729425 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
17 Hb_001341_040 0.1845144764 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
18 Hb_001115_050 0.1864534524 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
19 Hb_000176_170 0.1885613615 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
20 Hb_006029_010 0.1889046665 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_000987_050 Hb_000987_050 Hb_053543_010 Hb_053543_010 Hb_000987_050--Hb_053543_010 Hb_000317_080 Hb_000317_080 Hb_000987_050--Hb_000317_080 Hb_010931_110 Hb_010931_110 Hb_000987_050--Hb_010931_110 Hb_130177_010 Hb_130177_010 Hb_000987_050--Hb_130177_010 Hb_043959_010 Hb_043959_010 Hb_000987_050--Hb_043959_010 Hb_098315_110 Hb_098315_110 Hb_000987_050--Hb_098315_110 Hb_053543_010--Hb_043959_010 Hb_053543_010--Hb_000317_080 Hb_001268_230 Hb_001268_230 Hb_053543_010--Hb_001268_230 Hb_053543_010--Hb_098315_110 Hb_053543_010--Hb_130177_010 Hb_000317_080--Hb_001268_230 Hb_000317_080--Hb_098315_110 Hb_004648_040 Hb_004648_040 Hb_000317_080--Hb_004648_040 Hb_001628_110 Hb_001628_110 Hb_000317_080--Hb_001628_110 Hb_010931_110--Hb_130177_010 Hb_001198_090 Hb_001198_090 Hb_010931_110--Hb_001198_090 Hb_143629_050 Hb_143629_050 Hb_010931_110--Hb_143629_050 Hb_004032_240 Hb_004032_240 Hb_010931_110--Hb_004032_240 Hb_010931_110--Hb_053543_010 Hb_130177_010--Hb_098315_110 Hb_006029_010 Hb_006029_010 Hb_130177_010--Hb_006029_010 Hb_000300_540 Hb_000300_540 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070 Hb_002172_030 Hb_002172_030 Hb_043959_010--Hb_002172_030 Hb_000210_130 Hb_000210_130 Hb_043959_010--Hb_000210_130 Hb_043959_010--Hb_000300_540 Hb_012654_020 Hb_012654_020 Hb_043959_010--Hb_012654_020 Hb_154381_050 Hb_154381_050 Hb_043959_010--Hb_154381_050 Hb_000300_530 Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_098315_110--Hb_001268_230 Hb_098315_110--Hb_004648_040 Hb_098315_110--Hb_006029_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0178 1.15907 3.59956 0.27599 33.1084 11.3058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41703 4.78228 7.58251 0.946601 0.340978

CAGE analysis