Hb_010931_110

Information

Type -
Description -
Location Contig10931: 90103-91406
Sequence    

Annotation

kegg
ID rcu:RCOM_1194880
description ubiquitin-protein ligase, putative
nr
ID XP_002520393.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID B9S324
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1194880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_110 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_130177_010 0.1172388097 - - hypothetical protein RCOM_0897890 [Ricinus communis]
3 Hb_001198_090 0.1177215752 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
4 Hb_143629_050 0.118575145 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004032_240 0.1222111113 - - electron transporter, putative [Ricinus communis]
6 Hb_000987_050 0.1260858689 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
7 Hb_053543_010 0.1523557899 - - conserved hypothetical protein [Ricinus communis]
8 Hb_098315_110 0.1526947201 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001341_040 0.152881059 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
10 Hb_000317_080 0.155595353 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
11 Hb_003751_110 0.1589445686 - - unknown [Lotus japonicus]
12 Hb_000958_010 0.1600481382 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000327_210 0.1601307638 - - -
14 Hb_008453_020 0.1617034313 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
15 Hb_000300_530 0.1644442261 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
16 Hb_003893_170 0.1650149217 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
17 Hb_015456_020 0.1663789438 - - -
18 Hb_019153_040 0.1683410611 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
19 Hb_006452_060 0.1695463056 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_005057_010 0.1702364912 - - -

Gene co-expression network

sample Hb_010931_110 Hb_010931_110 Hb_130177_010 Hb_130177_010 Hb_010931_110--Hb_130177_010 Hb_001198_090 Hb_001198_090 Hb_010931_110--Hb_001198_090 Hb_143629_050 Hb_143629_050 Hb_010931_110--Hb_143629_050 Hb_004032_240 Hb_004032_240 Hb_010931_110--Hb_004032_240 Hb_000987_050 Hb_000987_050 Hb_010931_110--Hb_000987_050 Hb_053543_010 Hb_053543_010 Hb_010931_110--Hb_053543_010 Hb_098315_110 Hb_098315_110 Hb_130177_010--Hb_098315_110 Hb_006029_010 Hb_006029_010 Hb_130177_010--Hb_006029_010 Hb_000300_540 Hb_000300_540 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070 Hb_130177_010--Hb_000987_050 Hb_005529_010 Hb_005529_010 Hb_001198_090--Hb_005529_010 Hb_008453_020 Hb_008453_020 Hb_001198_090--Hb_008453_020 Hb_002276_190 Hb_002276_190 Hb_001198_090--Hb_002276_190 Hb_001198_090--Hb_130177_010 Hb_001427_170 Hb_001427_170 Hb_001198_090--Hb_001427_170 Hb_030620_010 Hb_030620_010 Hb_143629_050--Hb_030620_010 Hb_006452_060 Hb_006452_060 Hb_143629_050--Hb_006452_060 Hb_143629_050--Hb_004032_240 Hb_000958_010 Hb_000958_010 Hb_143629_050--Hb_000958_010 Hb_030982_040 Hb_030982_040 Hb_143629_050--Hb_030982_040 Hb_004032_240--Hb_000958_010 Hb_003893_170 Hb_003893_170 Hb_004032_240--Hb_003893_170 Hb_004032_240--Hb_008453_020 Hb_019153_040 Hb_019153_040 Hb_004032_240--Hb_019153_040 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030 Hb_000987_050--Hb_053543_010 Hb_000317_080 Hb_000317_080 Hb_000987_050--Hb_000317_080 Hb_043959_010 Hb_043959_010 Hb_000987_050--Hb_043959_010 Hb_000987_050--Hb_098315_110 Hb_053543_010--Hb_043959_010 Hb_053543_010--Hb_000317_080 Hb_001268_230 Hb_001268_230 Hb_053543_010--Hb_001268_230 Hb_053543_010--Hb_098315_110 Hb_053543_010--Hb_130177_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.41223 0.786327 1.03518 0.34274 16.5087 3.74832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47811 4.20378 5.52155 0.786263 0.196558

CAGE analysis