Hb_186982_030

Information

Type -
Description -
Location Contig186982: 4970-11326
Sequence    

Annotation

kegg
ID rcu:RCOM_0992710
description hypothetical protein
nr
ID XP_002520998.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S4U1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0992710 PE=4 SV=1
Gene Ontology
ID GO:0016021
description p-loop containing nucleoside triphosphate hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18454: 7635-7960 , PASA_asmbl_18455: 8914-10151
cDNA
(Sanger)
(ID:Location)		 027_J21.ab1: 7637-7960

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186982_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005063_010 0.117403637 - - HEV1.1 [Hevea brasiliensis]
3 Hb_000958_010 0.1359654538 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000101_170 0.1418966342 - - -
5 Hb_002200_110 0.1506641017 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004032_240 0.151272825 - - electron transporter, putative [Ricinus communis]
7 Hb_001911_030 0.1518235233 - - PREDICTED: disease resistance RPP8-like protein 3 [Jatropha curcas]
8 Hb_000329_610 0.1582492407 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000500_280 0.1583742821 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
10 Hb_128548_020 0.1601316549 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
11 Hb_005288_160 0.1608688911 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
12 Hb_001633_110 0.1617435646 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
13 Hb_000853_370 0.1640076543 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
14 Hb_017134_040 0.1649077752 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
15 Hb_001902_070 0.1649365742 - - ATP binding protein, putative [Ricinus communis]
16 Hb_001115_050 0.1691043757 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
17 Hb_002890_210 0.1699656586 - - PREDICTED: vinorine synthase-like [Jatropha curcas]
18 Hb_001514_200 0.1716473168 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
19 Hb_009662_030 0.1780642457 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
20 Hb_004295_020 0.1798358907 - - thioredoxin II-type 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_186982_030 Hb_186982_030 Hb_005063_010 Hb_005063_010 Hb_186982_030--Hb_005063_010 Hb_000958_010 Hb_000958_010 Hb_186982_030--Hb_000958_010 Hb_000101_170 Hb_000101_170 Hb_186982_030--Hb_000101_170 Hb_002200_110 Hb_002200_110 Hb_186982_030--Hb_002200_110 Hb_004032_240 Hb_004032_240 Hb_186982_030--Hb_004032_240 Hb_001911_030 Hb_001911_030 Hb_186982_030--Hb_001911_030 Hb_017134_040 Hb_017134_040 Hb_005063_010--Hb_017134_040 Hb_000329_610 Hb_000329_610 Hb_005063_010--Hb_000329_610 Hb_026048_090 Hb_026048_090 Hb_005063_010--Hb_026048_090 Hb_002038_060 Hb_002038_060 Hb_005063_010--Hb_002038_060 Hb_003627_020 Hb_003627_020 Hb_005063_010--Hb_003627_020 Hb_008453_020 Hb_008453_020 Hb_000958_010--Hb_008453_020 Hb_001514_200 Hb_001514_200 Hb_000958_010--Hb_001514_200 Hb_000958_010--Hb_004032_240 Hb_000117_040 Hb_000117_040 Hb_000958_010--Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000958_010--Hb_011609_190 Hb_000958_010--Hb_002200_110 Hb_000318_380 Hb_000318_380 Hb_000101_170--Hb_000318_380 Hb_000617_020 Hb_000617_020 Hb_000101_170--Hb_000617_020 Hb_000152_430 Hb_000152_430 Hb_000101_170--Hb_000152_430 Hb_003125_040 Hb_003125_040 Hb_000101_170--Hb_003125_040 Hb_060809_010 Hb_060809_010 Hb_000101_170--Hb_060809_010 Hb_000317_430 Hb_000317_430 Hb_000101_170--Hb_000317_430 Hb_002200_110--Hb_017134_040 Hb_009510_030 Hb_009510_030 Hb_002200_110--Hb_009510_030 Hb_000057_060 Hb_000057_060 Hb_002200_110--Hb_000057_060 Hb_003404_030 Hb_003404_030 Hb_002200_110--Hb_003404_030 Hb_001115_050 Hb_001115_050 Hb_002200_110--Hb_001115_050 Hb_003786_110 Hb_003786_110 Hb_002200_110--Hb_003786_110 Hb_010931_110 Hb_010931_110 Hb_004032_240--Hb_010931_110 Hb_003893_170 Hb_003893_170 Hb_004032_240--Hb_003893_170 Hb_004032_240--Hb_008453_020 Hb_019153_040 Hb_019153_040 Hb_004032_240--Hb_019153_040 Hb_001911_030--Hb_003786_110 Hb_001911_030--Hb_005063_010 Hb_001911_030--Hb_000329_610 Hb_000853_370 Hb_000853_370 Hb_001911_030--Hb_000853_370 Hb_001911_030--Hb_026048_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33977 0.261192 0.128673 0.501616 7.0106 4.39828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51649 3.69491 2.41406 2.25767 0

CAGE analysis