Hb_019153_040

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase
Location Contig19153: 40045-45824
Sequence    

Annotation

kegg
ID rcu:RCOM_0410350
description 1-deoxyxylulose-5-phosphate synthase, putative (EC:2.2.1.7)
nr
ID ABF18929.1
description putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
swissprot
ID Q6YU51
description Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1
trembl
ID A1XP41
description Putative 1-deoxy-D-xylulose 5-phosphate synthase OS=Hevea brasiliensis GN=DXS2 PE=2 SV=1
Gene Ontology
ID GO:0008661
description probable 1-deoxy-d-xylulose-5-phosphate synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19106: 40432-41412 , PASA_asmbl_19107: 41937-42922
cDNA
(Sanger)
(ID:Location)		 037_D21.ab1: 41937-42922

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019153_040 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
2 Hb_164732_010 0.142443131 - - -
3 Hb_002983_020 0.1486216124 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
4 Hb_004032_240 0.1507921768 - - electron transporter, putative [Ricinus communis]
5 Hb_009680_030 0.1588517453 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
6 Hb_010931_110 0.1683410611 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_008376_010 0.1756449127 - - -
8 Hb_143629_050 0.1808891661 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002818_100 0.1836403387 - - hypothetical protein JCGZ_14122 [Jatropha curcas]
10 Hb_000684_370 0.1881909651 - - -
11 Hb_000958_010 0.1901296263 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003125_050 0.1931102005 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
13 Hb_000300_530 0.1943680649 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
14 Hb_034083_010 0.1983256225 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001767_010 0.1983989999 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
16 Hb_006846_090 0.1985167039 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
17 Hb_003209_020 0.2039345763 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
18 Hb_098315_110 0.2093967413 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000331_610 0.2099752621 - - hypothetical protein B456_003G108600 [Gossypium raimondii]
20 Hb_000014_100 0.2103619265 - - -

Gene co-expression network

sample Hb_019153_040 Hb_019153_040 Hb_164732_010 Hb_164732_010 Hb_019153_040--Hb_164732_010 Hb_002983_020 Hb_002983_020 Hb_019153_040--Hb_002983_020 Hb_004032_240 Hb_004032_240 Hb_019153_040--Hb_004032_240 Hb_009680_030 Hb_009680_030 Hb_019153_040--Hb_009680_030 Hb_010931_110 Hb_010931_110 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010 Hb_000300_330 Hb_000300_330 Hb_164732_010--Hb_000300_330 Hb_000567_160 Hb_000567_160 Hb_164732_010--Hb_000567_160 Hb_164732_010--Hb_002983_020 Hb_164732_010--Hb_009680_030 Hb_006846_090 Hb_006846_090 Hb_164732_010--Hb_006846_090 Hb_002983_020--Hb_009680_030 Hb_000300_530 Hb_000300_530 Hb_002983_020--Hb_000300_530 Hb_003125_050 Hb_003125_050 Hb_002983_020--Hb_003125_050 Hb_002983_020--Hb_010931_110 Hb_053543_010 Hb_053543_010 Hb_002983_020--Hb_053543_010 Hb_000958_010 Hb_000958_010 Hb_004032_240--Hb_000958_010 Hb_004032_240--Hb_010931_110 Hb_003893_170 Hb_003893_170 Hb_004032_240--Hb_003893_170 Hb_008453_020 Hb_008453_020 Hb_004032_240--Hb_008453_020 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030 Hb_009680_030--Hb_006846_090 Hb_002311_250 Hb_002311_250 Hb_009680_030--Hb_002311_250 Hb_009680_030--Hb_010931_110 Hb_009680_030--Hb_000300_530 Hb_130177_010 Hb_130177_010 Hb_010931_110--Hb_130177_010 Hb_001198_090 Hb_001198_090 Hb_010931_110--Hb_001198_090 Hb_143629_050 Hb_143629_050 Hb_010931_110--Hb_143629_050 Hb_000987_050 Hb_000987_050 Hb_010931_110--Hb_000987_050 Hb_010931_110--Hb_053543_010 Hb_019973_030 Hb_019973_030 Hb_008376_010--Hb_019973_030 Hb_000014_100 Hb_000014_100 Hb_008376_010--Hb_000014_100 Hb_008376_010--Hb_003125_050 Hb_008376_010--Hb_000958_010 Hb_001514_190 Hb_001514_190 Hb_008376_010--Hb_001514_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.16861 0.600807 0.117697 0.131469 36.0308 9.04068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.69438 6.94845 16.6571 4.98097 0.194784

CAGE analysis