Hb_000014_100

Information

Type -
Description -
Location Contig14: 214346-226461
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10802: 214959-222799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000014_100 0.0 - - -
2 Hb_007245_090 0.072047969 - - -
3 Hb_006499_010 0.1043598664 - - -
4 Hb_001930_070 0.1078755679 - - -
5 Hb_003747_240 0.1225002963 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
6 Hb_011716_040 0.1244028418 - - -
7 Hb_001158_030 0.1256812554 - - -
8 Hb_005214_110 0.1324853136 - - -
9 Hb_000072_280 0.1402540765 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
10 Hb_030982_040 0.1416338098 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
11 Hb_000958_010 0.1441197544 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004882_020 0.1442483247 - - -
13 Hb_001514_190 0.1452302813 - - -
14 Hb_000729_060 0.1455536623 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000163_290 0.1463952939 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
16 Hb_000809_040 0.1466184533 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
17 Hb_015456_020 0.1495104112 - - -
18 Hb_002924_050 0.1500566391 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
19 Hb_114684_020 0.1530277454 - - beta-1,3-glucanase [Hevea brasiliensis]
20 Hb_000771_140 0.1545687365 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]

Gene co-expression network

sample Hb_000014_100 Hb_000014_100 Hb_007245_090 Hb_007245_090 Hb_000014_100--Hb_007245_090 Hb_006499_010 Hb_006499_010 Hb_000014_100--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000014_100--Hb_001930_070 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_011716_040 Hb_011716_040 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030 Hb_005214_110 Hb_005214_110 Hb_007245_090--Hb_005214_110 Hb_007245_090--Hb_001930_070 Hb_007245_090--Hb_006499_010 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_000339_070 Hb_000339_070 Hb_007245_090--Hb_000339_070 Hb_006499_010--Hb_001930_070 Hb_000163_290 Hb_000163_290 Hb_006499_010--Hb_000163_290 Hb_000033_050 Hb_000033_050 Hb_006499_010--Hb_000033_050 Hb_001186_060 Hb_001186_060 Hb_006499_010--Hb_001186_060 Hb_006499_010--Hb_003747_240 Hb_001930_070--Hb_001186_060 Hb_001930_070--Hb_000033_050 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_000809_040 Hb_000809_040 Hb_003747_240--Hb_000809_040 Hb_003747_240--Hb_000163_290 Hb_011174_070 Hb_011174_070 Hb_003747_240--Hb_011174_070 Hb_000138_040 Hb_000138_040 Hb_003747_240--Hb_000138_040 Hb_003404_030 Hb_003404_030 Hb_003747_240--Hb_003404_030 Hb_027556_010 Hb_027556_010 Hb_011716_040--Hb_027556_010 Hb_011716_040--Hb_001158_030 Hb_011716_040--Hb_000033_050 Hb_011716_040--Hb_006499_010 Hb_011716_040--Hb_001186_060 Hb_001158_030--Hb_027556_010 Hb_001158_030--Hb_001186_060 Hb_001158_030--Hb_001930_070 Hb_001158_030--Hb_005214_110 Hb_015456_020 Hb_015456_020 Hb_001158_030--Hb_015456_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4285 3.24481 0.339439 0.259744 19.2627 5.25606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9778 8.98411 13.2676 2.50561 0.215639

CAGE analysis