Hb_027556_010

Information

Type -
Description -
Location Contig27556: 16833-19466
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027556_010 0.0 - - -
2 Hb_001158_030 0.094789211 - - -
3 Hb_011716_040 0.1055837089 - - -
4 Hb_005057_010 0.1114148611 - - -
5 Hb_000140_150 0.1162122863 - - -
6 Hb_000926_270 0.1278171563 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
7 Hb_000958_010 0.1345348125 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005015_010 0.1363647655 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
9 Hb_008453_020 0.1442717529 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
10 Hb_001776_080 0.1480087562 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
11 Hb_005410_010 0.1498227475 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
12 Hb_002728_020 0.150258162 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
13 Hb_000117_040 0.1502997998 - - 30S ribosomal protein S6A [Hevea brasiliensis]
14 Hb_012654_020 0.1507640117 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010368_070 0.1507776613 - - conserved hypothetical protein [Ricinus communis]
16 Hb_050964_020 0.150968781 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
17 Hb_011609_190 0.1526070248 - - 14-3-3 protein 2 [Hevea brasiliensis]
18 Hb_001186_060 0.1533011063 - - -
19 Hb_003913_100 0.155027772 - - copper amine oxidase, putative [Ricinus communis]
20 Hb_001514_200 0.1550321632 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]

Gene co-expression network

sample Hb_027556_010 Hb_027556_010 Hb_001158_030 Hb_001158_030 Hb_027556_010--Hb_001158_030 Hb_011716_040 Hb_011716_040 Hb_027556_010--Hb_011716_040 Hb_005057_010 Hb_005057_010 Hb_027556_010--Hb_005057_010 Hb_000140_150 Hb_000140_150 Hb_027556_010--Hb_000140_150 Hb_000926_270 Hb_000926_270 Hb_027556_010--Hb_000926_270 Hb_000958_010 Hb_000958_010 Hb_027556_010--Hb_000958_010 Hb_001186_060 Hb_001186_060 Hb_001158_030--Hb_001186_060 Hb_001158_030--Hb_011716_040 Hb_001930_070 Hb_001930_070 Hb_001158_030--Hb_001930_070 Hb_005214_110 Hb_005214_110 Hb_001158_030--Hb_005214_110 Hb_015456_020 Hb_015456_020 Hb_001158_030--Hb_015456_020 Hb_000033_050 Hb_000033_050 Hb_011716_040--Hb_000033_050 Hb_006499_010 Hb_006499_010 Hb_011716_040--Hb_006499_010 Hb_011716_040--Hb_001186_060 Hb_000014_100 Hb_000014_100 Hb_011716_040--Hb_000014_100 Hb_005057_010--Hb_000140_150 Hb_010368_070 Hb_010368_070 Hb_005057_010--Hb_010368_070 Hb_005057_010--Hb_011716_040 Hb_095397_010 Hb_095397_010 Hb_005057_010--Hb_095397_010 Hb_000525_040 Hb_000525_040 Hb_005057_010--Hb_000525_040 Hb_000140_150--Hb_011716_040 Hb_030414_050 Hb_030414_050 Hb_000140_150--Hb_030414_050 Hb_000140_150--Hb_010368_070 Hb_000140_150--Hb_000926_270 Hb_002149_040 Hb_002149_040 Hb_000926_270--Hb_002149_040 Hb_005016_030 Hb_005016_030 Hb_000926_270--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_000926_270--Hb_001776_080 Hb_000953_140 Hb_000953_140 Hb_000926_270--Hb_000953_140 Hb_000692_260 Hb_000692_260 Hb_000926_270--Hb_000692_260 Hb_001016_060 Hb_001016_060 Hb_000926_270--Hb_001016_060 Hb_008453_020 Hb_008453_020 Hb_000958_010--Hb_008453_020 Hb_001514_200 Hb_001514_200 Hb_000958_010--Hb_001514_200 Hb_004032_240 Hb_004032_240 Hb_000958_010--Hb_004032_240 Hb_000117_040 Hb_000117_040 Hb_000958_010--Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000958_010--Hb_011609_190 Hb_002200_110 Hb_002200_110 Hb_000958_010--Hb_002200_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.523 29.2681 1.90115 0.836989 161.822 61.2652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.9907 47.9445 34.7733 12.6867 0.702694

CAGE analysis