Hb_000525_040

Information

Type -
Description -
Location Contig525: 44161-46466
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46961: 44638-46385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000525_040 0.0 - - -
2 Hb_010368_070 0.1049513078 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002903_120 0.1442616736 - - -
4 Hb_004032_460 0.1490125989 - - -
5 Hb_019936_010 0.1511667993 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
6 Hb_007634_020 0.1547564429 - - -
7 Hb_011616_030 0.1554242442 - - -
8 Hb_004092_010 0.1566317338 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_005057_010 0.1595548336 - - -
10 Hb_002728_020 0.1608058167 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
11 Hb_001635_220 0.1649489996 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
12 Hb_000188_190 0.1654288378 - - -
13 Hb_170116_010 0.1673140781 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
14 Hb_000156_030 0.1710231557 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000173_370 0.1711342064 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
16 Hb_003304_080 0.174101645 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
17 Hb_001454_390 0.1745884804 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
18 Hb_089140_080 0.1760580764 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
19 Hb_000050_120 0.1765576696 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
20 Hb_004659_070 0.1815331506 - - PREDICTED: organ-specific protein P4-like [Vitis vinifera]

Gene co-expression network

sample Hb_000525_040 Hb_000525_040 Hb_010368_070 Hb_010368_070 Hb_000525_040--Hb_010368_070 Hb_002903_120 Hb_002903_120 Hb_000525_040--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_000525_040--Hb_004032_460 Hb_019936_010 Hb_019936_010 Hb_000525_040--Hb_019936_010 Hb_007634_020 Hb_007634_020 Hb_000525_040--Hb_007634_020 Hb_011616_030 Hb_011616_030 Hb_000525_040--Hb_011616_030 Hb_010368_070--Hb_002903_120 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_000173_210 Hb_000173_210 Hb_002903_120--Hb_000173_210 Hb_002897_040 Hb_002897_040 Hb_002903_120--Hb_002897_040 Hb_045502_010 Hb_045502_010 Hb_002903_120--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_002903_120--Hb_000544_120 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_000173_370 Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_019936_010--Hb_011616_030 Hb_000668_010 Hb_000668_010 Hb_019936_010--Hb_000668_010 Hb_032264_130 Hb_032264_130 Hb_019936_010--Hb_032264_130 Hb_019936_010--Hb_010368_070 Hb_001454_390 Hb_001454_390 Hb_019936_010--Hb_001454_390 Hb_002026_230 Hb_002026_230 Hb_007634_020--Hb_002026_230 Hb_000156_030 Hb_000156_030 Hb_007634_020--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_007634_020--Hb_005568_070 Hb_156144_020 Hb_156144_020 Hb_007634_020--Hb_156144_020 Hb_001892_160 Hb_001892_160 Hb_007634_020--Hb_001892_160 Hb_011616_030--Hb_032264_130 Hb_170116_010 Hb_170116_010 Hb_011616_030--Hb_170116_010 Hb_000523_020 Hb_000523_020 Hb_011616_030--Hb_000523_020 Hb_002388_060 Hb_002388_060 Hb_011616_030--Hb_002388_060 Hb_095397_010 Hb_095397_010 Hb_011616_030--Hb_095397_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.3323 5.86319 3.19737 0.595964 87.4141 31.0294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2932 12.122 6.23629 1.7054 0.941048

CAGE analysis