Hb_032264_130

Information

Type -
Description -
Location Contig32264: 93584-99703
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14890g
description hypothetical protein
nr
ID KDP22674.1
description hypothetical protein JCGZ_02516 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JT24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02516 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34219: 99452-99921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032264_130 0.0 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
2 Hb_002388_060 0.1187177772 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011616_030 0.1248684749 - - -
4 Hb_053262_010 0.1440146705 - - -
5 Hb_019936_010 0.1511284243 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
6 Hb_007545_210 0.1527776746 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
7 Hb_170116_010 0.1532707514 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
8 Hb_000523_020 0.1641608808 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
9 Hb_000186_100 0.174814823 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
10 Hb_043637_010 0.1759838404 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
11 Hb_095397_010 0.176752156 - - hypothetical protein 25 [Hevea brasiliensis]
12 Hb_031862_170 0.1867631293 - - immunophilin, putative [Ricinus communis]
13 Hb_017111_010 0.1872649544 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
14 Hb_004032_460 0.1878418516 - - -
15 Hb_001454_390 0.1893639922 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
16 Hb_007634_020 0.1904212 - - -
17 Hb_010368_070 0.1922548699 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000365_350 0.192259486 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
19 Hb_002025_230 0.1925340441 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
20 Hb_003304_080 0.1926128791 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_032264_130 Hb_032264_130 Hb_002388_060 Hb_002388_060 Hb_032264_130--Hb_002388_060 Hb_011616_030 Hb_011616_030 Hb_032264_130--Hb_011616_030 Hb_053262_010 Hb_053262_010 Hb_032264_130--Hb_053262_010 Hb_019936_010 Hb_019936_010 Hb_032264_130--Hb_019936_010 Hb_007545_210 Hb_007545_210 Hb_032264_130--Hb_007545_210 Hb_170116_010 Hb_170116_010 Hb_032264_130--Hb_170116_010 Hb_002388_060--Hb_007545_210 Hb_000523_020 Hb_000523_020 Hb_002388_060--Hb_000523_020 Hb_000416_100 Hb_000416_100 Hb_002388_060--Hb_000416_100 Hb_000270_400 Hb_000270_400 Hb_002388_060--Hb_000270_400 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390 Hb_011616_030--Hb_170116_010 Hb_011616_030--Hb_000523_020 Hb_011616_030--Hb_019936_010 Hb_011616_030--Hb_002388_060 Hb_095397_010 Hb_095397_010 Hb_011616_030--Hb_095397_010 Hb_043637_010 Hb_043637_010 Hb_053262_010--Hb_043637_010 Hb_053262_010--Hb_170116_010 Hb_053262_010--Hb_095397_010 Hb_003304_080 Hb_003304_080 Hb_053262_010--Hb_003304_080 Hb_010368_070 Hb_010368_070 Hb_053262_010--Hb_010368_070 Hb_000668_010 Hb_000668_010 Hb_019936_010--Hb_000668_010 Hb_000525_040 Hb_000525_040 Hb_019936_010--Hb_000525_040 Hb_019936_010--Hb_010368_070 Hb_019936_010--Hb_001454_390 Hb_007545_210--Hb_000270_400 Hb_007545_210--Hb_000523_020 Hb_007545_210--Hb_000416_100 Hb_002627_060 Hb_002627_060 Hb_007545_210--Hb_002627_060 Hb_000376_150 Hb_000376_150 Hb_007545_210--Hb_000376_150 Hb_170116_010--Hb_043637_010 Hb_000352_150 Hb_000352_150 Hb_170116_010--Hb_000352_150 Hb_170116_010--Hb_000523_020 Hb_170116_010--Hb_001454_390 Hb_002875_090 Hb_002875_090 Hb_170116_010--Hb_002875_090 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.481 1.54675 2.34228 2.19164 60.4206 41.8799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8651 15.6276 23.6338 2.61137 1.55639

CAGE analysis