Hb_000416_100

Information

Type -
Description -
Location Contig416: 83891-87617
Sequence    

Annotation

kegg
ID tcc:TCM_029621
description Adipose-regulatory protein, putative
nr
ID XP_012091848.1
description PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41153: 84911-87329 , PASA_asmbl_41154: 87342-87480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_100 0.0 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
2 Hb_001825_010 0.1074849305 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
3 Hb_002388_060 0.1105863928 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007545_210 0.1161551253 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
5 Hb_000714_020 0.1259142221 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
6 Hb_004738_090 0.1295103803 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000365_350 0.1310531019 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
8 Hb_011609_030 0.1313266148 - - conserved hypothetical protein 13 [Hevea brasiliensis]
9 Hb_178968_150 0.1314566633 - - zinc finger protein, putative [Ricinus communis]
10 Hb_005754_020 0.1316407536 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
11 Hb_000028_470 0.1324013949 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
12 Hb_012977_010 0.1352025774 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
13 Hb_000085_340 0.1366952293 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
14 Hb_002078_430 0.1368266081 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
15 Hb_001673_120 0.1373731457 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
16 Hb_000270_400 0.1376375383 - - lipase, putative [Ricinus communis]
17 Hb_001195_110 0.14182742 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_011930_010 0.1425883542 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
19 Hb_003636_090 0.1444859306 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
20 Hb_002025_230 0.1456684993 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]

Gene co-expression network

sample Hb_000416_100 Hb_000416_100 Hb_001825_010 Hb_001825_010 Hb_000416_100--Hb_001825_010 Hb_002388_060 Hb_002388_060 Hb_000416_100--Hb_002388_060 Hb_007545_210 Hb_007545_210 Hb_000416_100--Hb_007545_210 Hb_000714_020 Hb_000714_020 Hb_000416_100--Hb_000714_020 Hb_004738_090 Hb_004738_090 Hb_000416_100--Hb_004738_090 Hb_000365_350 Hb_000365_350 Hb_000416_100--Hb_000365_350 Hb_012977_010 Hb_012977_010 Hb_001825_010--Hb_012977_010 Hb_001825_010--Hb_000365_350 Hb_001523_010 Hb_001523_010 Hb_001825_010--Hb_001523_010 Hb_002149_040 Hb_002149_040 Hb_001825_010--Hb_002149_040 Hb_000363_340 Hb_000363_340 Hb_001825_010--Hb_000363_340 Hb_002388_060--Hb_007545_210 Hb_000523_020 Hb_000523_020 Hb_002388_060--Hb_000523_020 Hb_000270_400 Hb_000270_400 Hb_002388_060--Hb_000270_400 Hb_032264_130 Hb_032264_130 Hb_002388_060--Hb_032264_130 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390 Hb_007545_210--Hb_000270_400 Hb_007545_210--Hb_000523_020 Hb_002627_060 Hb_002627_060 Hb_007545_210--Hb_002627_060 Hb_000376_150 Hb_000376_150 Hb_007545_210--Hb_000376_150 Hb_011609_030 Hb_011609_030 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_002067_160 Hb_002067_160 Hb_004738_090--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_000088_180 Hb_000088_180 Hb_000365_350--Hb_000088_180 Hb_004032_460 Hb_004032_460 Hb_000365_350--Hb_004032_460 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
501.519 40.9978 12.8031 51.2707 191.807 262.479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
156.941 94.8371 117.192 19.1663 11.4043

CAGE analysis