Hb_001892_160

Information

Type -
Description -
Location Contig1892: 171740-178345
Sequence    

Annotation

kegg
ID cit:102622916
description MLP-like protein 28-like
nr
ID XP_006469314.1
description PREDICTED: MLP-like protein 28-like [Citrus sinensis]
swissprot
ID Q9SSK7
description MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1
trembl
ID W9QSL3
description MLP-like protein 28 OS=Morus notabilis GN=L484_018882 PE=4 SV=1
Gene Ontology
ID GO:0050896
description mlp-like protein 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18780: 172589-173306
cDNA
(Sanger)
(ID:Location)		 053_N15.ab1: 172596-173302

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001892_160 0.0 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
2 Hb_156144_020 0.1250399335 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
3 Hb_171554_020 0.1400230323 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
4 Hb_000007_310 0.14180444 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
5 Hb_132629_010 0.1420945521 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_000153_020 0.1425821958 - - conserved hypothetical protein [Ricinus communis]
7 Hb_177627_010 0.1458624328 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_075570_010 0.1489461984 - - -
9 Hb_000580_060 0.1511102394 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
10 Hb_010290_020 0.1559478375 - - RAB6-interacting protein, putative [Ricinus communis]
11 Hb_000094_390 0.1597633382 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
12 Hb_001741_100 0.1627279095 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
13 Hb_007634_020 0.1720161212 - - -
14 Hb_003494_260 0.1743940337 - - -
15 Hb_004307_040 0.176047405 - - -
16 Hb_001604_110 0.1805153804 - - -
17 Hb_005568_070 0.1817164019 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
18 Hb_027998_030 0.1823760841 - - laccase, putative [Ricinus communis]
19 Hb_000175_530 0.1834323782 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
20 Hb_000153_040 0.185166892 - - -

Gene co-expression network

sample Hb_001892_160 Hb_001892_160 Hb_156144_020 Hb_156144_020 Hb_001892_160--Hb_156144_020 Hb_171554_020 Hb_171554_020 Hb_001892_160--Hb_171554_020 Hb_000007_310 Hb_000007_310 Hb_001892_160--Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_001892_160--Hb_132629_010 Hb_000153_020 Hb_000153_020 Hb_001892_160--Hb_000153_020 Hb_177627_010 Hb_177627_010 Hb_001892_160--Hb_177627_010 Hb_000175_530 Hb_000175_530 Hb_156144_020--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_156144_020--Hb_000580_060 Hb_003494_260 Hb_003494_260 Hb_156144_020--Hb_003494_260 Hb_001017_100 Hb_001017_100 Hb_156144_020--Hb_001017_100 Hb_007634_020 Hb_007634_020 Hb_156144_020--Hb_007634_020 Hb_010290_020 Hb_010290_020 Hb_171554_020--Hb_010290_020 Hb_171554_020--Hb_000580_060 Hb_171554_020--Hb_000007_310 Hb_001604_110 Hb_001604_110 Hb_171554_020--Hb_001604_110 Hb_171554_020--Hb_177627_010 Hb_000007_310--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_000007_310--Hb_075570_010 Hb_000007_310--Hb_177627_010 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_000007_310--Hb_000153_040 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_177627_010 Hb_132629_010--Hb_003494_260 Hb_132629_010--Hb_000153_020 Hb_132629_010--Hb_000153_040 Hb_000153_020--Hb_177627_010 Hb_005539_320 Hb_005539_320 Hb_000153_020--Hb_005539_320 Hb_001178_120 Hb_001178_120 Hb_000153_020--Hb_001178_120 Hb_000153_020--Hb_075570_010 Hb_177627_010--Hb_001604_110 Hb_177627_010--Hb_075570_010 Hb_177627_010--Hb_005539_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1907.25 21.3872 2.06804 22.5049 1369.02 1375.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.7711 15.0769 64.1356 6.21099 4.15187

CAGE analysis