Hb_005539_320

Information

Type -
Description -
Location Contig5539: 258131-258577
Sequence    

Annotation

kegg
ID vvi:104880000
description pumilio homolog 15-like
nr
ID XP_010653283.1
description PREDICTED: pumilio homolog 15-like [Vitis vinifera]
swissprot
ID O81465
description Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
trembl
ID A5BE87
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002607 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_320 0.0 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
2 Hb_001604_110 0.0535639856 - - -
3 Hb_177627_010 0.0899640241 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_000153_020 0.1178742368 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001178_120 0.1357588194 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
6 Hb_132629_010 0.1464096332 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_000007_310 0.1569599009 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
8 Hb_075570_010 0.1752377898 - - -
9 Hb_000094_390 0.1758028265 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
10 Hb_001892_160 0.1881587112 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
11 Hb_171554_020 0.2040152943 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
12 Hb_000153_040 0.2212280196 - - -
13 Hb_003494_260 0.2218605486 - - -
14 Hb_158990_010 0.222792647 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_182310_010 0.2421678331 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_001241_040 0.2449163938 - - -
17 Hb_122567_010 0.2462662761 - - -
18 Hb_000345_480 0.2610662573 - - cyclin-dependent protein kinase, putative [Ricinus communis]
19 Hb_000028_630 0.2624564889 - - PIN-like protein, partial [Selaginella apoda]
20 Hb_027998_030 0.2646377486 - - laccase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005539_320 Hb_005539_320 Hb_001604_110 Hb_001604_110 Hb_005539_320--Hb_001604_110 Hb_177627_010 Hb_177627_010 Hb_005539_320--Hb_177627_010 Hb_000153_020 Hb_000153_020 Hb_005539_320--Hb_000153_020 Hb_001178_120 Hb_001178_120 Hb_005539_320--Hb_001178_120 Hb_132629_010 Hb_132629_010 Hb_005539_320--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_005539_320--Hb_000007_310 Hb_001604_110--Hb_177627_010 Hb_001604_110--Hb_000153_020 Hb_001604_110--Hb_132629_010 Hb_001604_110--Hb_000007_310 Hb_075570_010 Hb_075570_010 Hb_001604_110--Hb_075570_010 Hb_177627_010--Hb_132629_010 Hb_177627_010--Hb_000007_310 Hb_177627_010--Hb_075570_010 Hb_177627_010--Hb_000153_020 Hb_000153_020--Hb_132629_010 Hb_000153_020--Hb_000007_310 Hb_000153_020--Hb_001178_120 Hb_000153_020--Hb_075570_010 Hb_158990_010 Hb_158990_010 Hb_001178_120--Hb_158990_010 Hb_000094_390 Hb_000094_390 Hb_001178_120--Hb_000094_390 Hb_001178_120--Hb_177627_010 Hb_001178_120--Hb_132629_010 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_000007_310 Hb_003494_260 Hb_003494_260 Hb_132629_010--Hb_003494_260 Hb_000153_040 Hb_000153_040 Hb_132629_010--Hb_000153_040 Hb_000007_310--Hb_075570_010 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00549 0 0 0 0.338847 0.530843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis