Hb_000140_150

Information

Type -
Description -
Location Contig140: 108623-117830
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_150 0.0 - - -
2 Hb_005057_010 0.1135844215 - - -
3 Hb_027556_010 0.1162122863 - - -
4 Hb_011716_040 0.1358602569 - - -
5 Hb_030414_050 0.1589277736 - - -
6 Hb_010368_070 0.1602079397 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000926_270 0.1652225796 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
8 Hb_004097_020 0.1723897701 - - conserved hypothetical protein [Ricinus communis]
9 Hb_130177_010 0.1727398899 - - hypothetical protein RCOM_0897890 [Ricinus communis]
10 Hb_005228_100 0.1811061947 - - -
11 Hb_002728_020 0.182787822 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
12 Hb_000753_210 0.1839354301 - - l-asparaginase, putative [Ricinus communis]
13 Hb_001158_030 0.1854358537 - - -
14 Hb_000173_370 0.1862434651 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
15 Hb_000525_040 0.1897578027 - - -
16 Hb_080083_010 0.1899643937 - - -
17 Hb_011457_110 0.1899925388 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
18 Hb_002903_120 0.1907054529 - - -
19 Hb_000317_080 0.1911621517 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
20 Hb_003050_090 0.1930316633 - - lupus la ribonucleoprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000140_150 Hb_000140_150 Hb_005057_010 Hb_005057_010 Hb_000140_150--Hb_005057_010 Hb_027556_010 Hb_027556_010 Hb_000140_150--Hb_027556_010 Hb_011716_040 Hb_011716_040 Hb_000140_150--Hb_011716_040 Hb_030414_050 Hb_030414_050 Hb_000140_150--Hb_030414_050 Hb_010368_070 Hb_010368_070 Hb_000140_150--Hb_010368_070 Hb_000926_270 Hb_000926_270 Hb_000140_150--Hb_000926_270 Hb_005057_010--Hb_027556_010 Hb_005057_010--Hb_010368_070 Hb_005057_010--Hb_011716_040 Hb_095397_010 Hb_095397_010 Hb_005057_010--Hb_095397_010 Hb_000525_040 Hb_000525_040 Hb_005057_010--Hb_000525_040 Hb_001158_030 Hb_001158_030 Hb_027556_010--Hb_001158_030 Hb_027556_010--Hb_011716_040 Hb_027556_010--Hb_000926_270 Hb_000958_010 Hb_000958_010 Hb_027556_010--Hb_000958_010 Hb_011716_040--Hb_001158_030 Hb_000033_050 Hb_000033_050 Hb_011716_040--Hb_000033_050 Hb_006499_010 Hb_006499_010 Hb_011716_040--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_011716_040--Hb_001186_060 Hb_000014_100 Hb_000014_100 Hb_011716_040--Hb_000014_100 Hb_060437_010 Hb_060437_010 Hb_030414_050--Hb_060437_010 Hb_003050_090 Hb_003050_090 Hb_030414_050--Hb_003050_090 Hb_000692_170 Hb_000692_170 Hb_030414_050--Hb_000692_170 Hb_002192_070 Hb_002192_070 Hb_030414_050--Hb_002192_070 Hb_007416_200 Hb_007416_200 Hb_030414_050--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_030414_050--Hb_000093_130 Hb_010368_070--Hb_000525_040 Hb_002903_120 Hb_002903_120 Hb_010368_070--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_002149_040 Hb_002149_040 Hb_000926_270--Hb_002149_040 Hb_005016_030 Hb_005016_030 Hb_000926_270--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_000926_270--Hb_001776_080 Hb_000953_140 Hb_000953_140 Hb_000926_270--Hb_000953_140 Hb_000692_260 Hb_000692_260 Hb_000926_270--Hb_000692_260 Hb_001016_060 Hb_001016_060 Hb_000926_270--Hb_001016_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
164.108 55.6431 4.37782 0.469545 268.855 68.354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.5652 43.0514 52.367 16.7561 0

CAGE analysis