Hb_011716_040

Information

Type -
Description -
Location Contig11716: 22217-23788
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05310: 22196-24059
cDNA
(Sanger)
(ID:Location)		 044_M23.ab1: 22196-24059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_040 0.0 - - -
2 Hb_027556_010 0.1055837089 - - -
3 Hb_001158_030 0.1169650105 - - -
4 Hb_000033_050 0.1207381492 - - -
5 Hb_006499_010 0.1217761144 - - -
6 Hb_001186_060 0.1238848132 - - -
7 Hb_000014_100 0.1244028418 - - -
8 Hb_000926_270 0.1273999131 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
9 Hb_000163_290 0.1278784072 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
10 Hb_000953_140 0.1322105685 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
11 Hb_000140_150 0.1358602569 - - -
12 Hb_000371_110 0.1359395197 - - -
13 Hb_001930_070 0.1368495965 - - -
14 Hb_027380_160 0.139405374 - - -
15 Hb_003747_240 0.1401942625 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
16 Hb_024399_010 0.1422062787 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
17 Hb_000958_010 0.143287901 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000117_040 0.1438058381 - - 30S ribosomal protein S6A [Hevea brasiliensis]
19 Hb_096962_020 0.1464337149 - - -
20 Hb_011609_190 0.1468198552 - - 14-3-3 protein 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_011716_040 Hb_011716_040 Hb_027556_010 Hb_027556_010 Hb_011716_040--Hb_027556_010 Hb_001158_030 Hb_001158_030 Hb_011716_040--Hb_001158_030 Hb_000033_050 Hb_000033_050 Hb_011716_040--Hb_000033_050 Hb_006499_010 Hb_006499_010 Hb_011716_040--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_011716_040--Hb_001186_060 Hb_000014_100 Hb_000014_100 Hb_011716_040--Hb_000014_100 Hb_027556_010--Hb_001158_030 Hb_005057_010 Hb_005057_010 Hb_027556_010--Hb_005057_010 Hb_000140_150 Hb_000140_150 Hb_027556_010--Hb_000140_150 Hb_000926_270 Hb_000926_270 Hb_027556_010--Hb_000926_270 Hb_000958_010 Hb_000958_010 Hb_027556_010--Hb_000958_010 Hb_001158_030--Hb_001186_060 Hb_001930_070 Hb_001930_070 Hb_001158_030--Hb_001930_070 Hb_005214_110 Hb_005214_110 Hb_001158_030--Hb_005214_110 Hb_015456_020 Hb_015456_020 Hb_001158_030--Hb_015456_020 Hb_000033_050--Hb_006499_010 Hb_000033_050--Hb_001930_070 Hb_000163_290 Hb_000163_290 Hb_000033_050--Hb_000163_290 Hb_000033_050--Hb_001186_060 Hb_000371_110 Hb_000371_110 Hb_000033_050--Hb_000371_110 Hb_006499_010--Hb_001930_070 Hb_006499_010--Hb_000163_290 Hb_007245_090 Hb_007245_090 Hb_006499_010--Hb_007245_090 Hb_006499_010--Hb_001186_060 Hb_003747_240 Hb_003747_240 Hb_006499_010--Hb_003747_240 Hb_001186_060--Hb_001930_070 Hb_001186_060--Hb_000371_110 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_000014_100--Hb_007245_090 Hb_000014_100--Hb_006499_010 Hb_000014_100--Hb_001930_070 Hb_000014_100--Hb_003747_240 Hb_000014_100--Hb_001158_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5766 7.76997 0.611749 0.161216 27.712 10.5825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7903 8.65558 12.9847 4.18449 0.16887

CAGE analysis