Hb_004882_020

Information

Type -
Description -
Location Contig4882: 14563-25293
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004882_020 0.0 - - -
2 Hb_000809_040 0.0798003184 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
3 Hb_001437_240 0.0849052902 - - -
4 Hb_001981_090 0.0882565934 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
5 Hb_008695_190 0.0897565102 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
6 Hb_001366_220 0.0945867719 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000072_280 0.095080328 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
8 Hb_000085_310 0.1035893646 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
9 Hb_002897_060 0.1040434266 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
10 Hb_005357_150 0.1048567291 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_007245_090 0.1063665981 - - -
12 Hb_007229_060 0.1066514119 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
13 Hb_001478_050 0.1086625734 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
14 Hb_183612_100 0.113899055 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
15 Hb_025087_010 0.113994156 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
16 Hb_000983_100 0.1145125032 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
17 Hb_000861_040 0.1151540281 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
18 Hb_000805_090 0.1174218974 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
19 Hb_001606_070 0.1188716894 - - fimbrin, putative [Ricinus communis]
20 Hb_000300_620 0.1189401272 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]

Gene co-expression network

sample Hb_004882_020 Hb_004882_020 Hb_000809_040 Hb_000809_040 Hb_004882_020--Hb_000809_040 Hb_001437_240 Hb_001437_240 Hb_004882_020--Hb_001437_240 Hb_001981_090 Hb_001981_090 Hb_004882_020--Hb_001981_090 Hb_008695_190 Hb_008695_190 Hb_004882_020--Hb_008695_190 Hb_001366_220 Hb_001366_220 Hb_004882_020--Hb_001366_220 Hb_000072_280 Hb_000072_280 Hb_004882_020--Hb_000072_280 Hb_000809_040--Hb_001366_220 Hb_000313_380 Hb_000313_380 Hb_000809_040--Hb_000313_380 Hb_000809_040--Hb_001981_090 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_183612_100 Hb_183612_100 Hb_001437_240--Hb_183612_100 Hb_143629_090 Hb_143629_090 Hb_001437_240--Hb_143629_090 Hb_002307_090 Hb_002307_090 Hb_001437_240--Hb_002307_090 Hb_002936_050 Hb_002936_050 Hb_001437_240--Hb_002936_050 Hb_004800_160 Hb_004800_160 Hb_001437_240--Hb_004800_160 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001981_090--Hb_001366_220 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090 Hb_008695_190--Hb_000072_280 Hb_025087_010 Hb_025087_010 Hb_008695_190--Hb_025087_010 Hb_008695_190--Hb_001981_090 Hb_001366_230 Hb_001366_230 Hb_008695_190--Hb_001366_230 Hb_008695_190--Hb_000809_040 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_001366_220--Hb_000085_310 Hb_001366_220--Hb_002357_040 Hb_001191_100 Hb_001191_100 Hb_000072_280--Hb_001191_100 Hb_000072_280--Hb_001366_220 Hb_000072_280--Hb_000085_310 Hb_000072_280--Hb_001366_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1134 6.32527 0.731841 1.10342 23.782 16.262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7654 24.6217 38.2699 7.54841 2.01339

CAGE analysis