Hb_183612_100

Information

Type transcription factor
Description TF Family: GRAS
Location Contig183612: 45075-47741
Sequence    

Annotation

kegg
ID rcu:RCOM_1062060
description hypothetical protein
nr
ID XP_012069957.1
description PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
swissprot
ID O81316
description Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1
trembl
ID B9SSH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062060 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183612_100 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
2 Hb_003747_030 0.1075092453 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
3 Hb_008085_040 0.1091131435 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
4 Hb_152439_020 0.1102232721 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
5 Hb_000861_040 0.1104026346 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
6 Hb_004951_040 0.1135041351 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
7 Hb_004882_020 0.113899055 - - -
8 Hb_001437_240 0.1148659489 - - -
9 Hb_000622_040 0.1150222011 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
10 Hb_003408_030 0.1152295604 - - PREDICTED: protein YIF1B [Jatropha curcas]
11 Hb_003943_030 0.1157530181 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
12 Hb_002794_030 0.1165732189 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
13 Hb_000059_220 0.1171321188 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
14 Hb_000223_150 0.118615506 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
15 Hb_007924_020 0.1192738378 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_004800_160 0.1232737555 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
17 Hb_001981_090 0.124147104 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
18 Hb_007229_060 0.1252271596 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
19 Hb_001478_050 0.1255084415 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
20 Hb_001157_030 0.1257913043 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_183612_100 Hb_183612_100 Hb_003747_030 Hb_003747_030 Hb_183612_100--Hb_003747_030 Hb_008085_040 Hb_008085_040 Hb_183612_100--Hb_008085_040 Hb_152439_020 Hb_152439_020 Hb_183612_100--Hb_152439_020 Hb_000861_040 Hb_000861_040 Hb_183612_100--Hb_000861_040 Hb_004951_040 Hb_004951_040 Hb_183612_100--Hb_004951_040 Hb_004882_020 Hb_004882_020 Hb_183612_100--Hb_004882_020 Hb_001157_030 Hb_001157_030 Hb_003747_030--Hb_001157_030 Hb_002890_280 Hb_002890_280 Hb_003747_030--Hb_002890_280 Hb_000018_190 Hb_000018_190 Hb_003747_030--Hb_000018_190 Hb_000056_100 Hb_000056_100 Hb_003747_030--Hb_000056_100 Hb_003025_090 Hb_003025_090 Hb_003747_030--Hb_003025_090 Hb_001959_160 Hb_001959_160 Hb_008085_040--Hb_001959_160 Hb_007229_060 Hb_007229_060 Hb_008085_040--Hb_007229_060 Hb_000223_150 Hb_000223_150 Hb_008085_040--Hb_000223_150 Hb_000156_100 Hb_000156_100 Hb_008085_040--Hb_000156_100 Hb_001396_230 Hb_001396_230 Hb_008085_040--Hb_001396_230 Hb_008085_040--Hb_000861_040 Hb_000193_250 Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_004306_060 Hb_004306_060 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_002326_030 Hb_002326_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_008453_090 Hb_008453_090 Hb_004951_040--Hb_008453_090 Hb_008289_060 Hb_008289_060 Hb_004951_040--Hb_008289_060 Hb_055062_030 Hb_055062_030 Hb_004951_040--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_004951_040--Hb_003018_200 Hb_004951_040--Hb_000223_150 Hb_005333_130 Hb_005333_130 Hb_004951_040--Hb_005333_130 Hb_000809_040 Hb_000809_040 Hb_004882_020--Hb_000809_040 Hb_001437_240 Hb_001437_240 Hb_004882_020--Hb_001437_240 Hb_001981_090 Hb_001981_090 Hb_004882_020--Hb_001981_090 Hb_008695_190 Hb_008695_190 Hb_004882_020--Hb_008695_190 Hb_001366_220 Hb_001366_220 Hb_004882_020--Hb_001366_220 Hb_000072_280 Hb_000072_280 Hb_004882_020--Hb_000072_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.535 28.9381 9.128 8.8528 69.3962 54.3521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.185 124.547 195.509 38.6136 19.03

CAGE analysis