Hb_000018_190

Information

Type -
Description -
Location Contig18: 273410-291375
Sequence    

Annotation

kegg
ID rcu:RCOM_0802380
description Tocopherol cyclase, chloroplast precursor, putative
nr
ID BAH10644.1
description tocopherol cyclase [Hevea brasiliensis]
swissprot
ID Q94FY7
description Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=2 SV=1
trembl
ID B7X941
description Tocopherol cyclase OS=Hevea brasiliensis GN=tc PE=2 SV=1
Gene Ontology
ID GO:0009941
description tocopherol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17434: 272110-289564 , PASA_asmbl_17436: 289592-289926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000018_190 0.0 - - tocopherol cyclase [Hevea brasiliensis]
2 Hb_003777_180 0.111851034 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
3 Hb_003018_140 0.1170345982 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
4 Hb_003747_030 0.1184195454 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
5 Hb_000412_110 0.1245069148 - - Rop4 [Hevea brasiliensis]
6 Hb_000329_040 0.1282444709 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
7 Hb_000260_080 0.1294113219 - - thioredoxin H-type 1 [Hevea brasiliensis]
8 Hb_000173_170 0.1324551935 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
9 Hb_102864_010 0.1348378477 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
10 Hb_000676_220 0.1367226661 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_002043_180 0.1369369898 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
12 Hb_057183_040 0.1383595147 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
13 Hb_000521_150 0.1386710723 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
14 Hb_001609_030 0.1390927069 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
15 Hb_000329_690 0.1395025311 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
16 Hb_011794_070 0.1399635726 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
17 Hb_178968_150 0.1400993216 - - zinc finger protein, putative [Ricinus communis]
18 Hb_002326_030 0.1402677239 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
19 Hb_003226_150 0.1404085432 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
20 Hb_000418_180 0.140662474 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000018_190 Hb_000018_190 Hb_003777_180 Hb_003777_180 Hb_000018_190--Hb_003777_180 Hb_003018_140 Hb_003018_140 Hb_000018_190--Hb_003018_140 Hb_003747_030 Hb_003747_030 Hb_000018_190--Hb_003747_030 Hb_000412_110 Hb_000412_110 Hb_000018_190--Hb_000412_110 Hb_000329_040 Hb_000329_040 Hb_000018_190--Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_000018_190--Hb_000260_080 Hb_000481_020 Hb_000481_020 Hb_003777_180--Hb_000481_020 Hb_003777_180--Hb_000329_040 Hb_003777_180--Hb_000412_110 Hb_002681_020 Hb_002681_020 Hb_003777_180--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_003777_180--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_003777_180--Hb_006569_020 Hb_006120_200 Hb_006120_200 Hb_003018_140--Hb_006120_200 Hb_003018_140--Hb_003777_180 Hb_002043_180 Hb_002043_180 Hb_003018_140--Hb_002043_180 Hb_004286_040 Hb_004286_040 Hb_003018_140--Hb_004286_040 Hb_001357_140 Hb_001357_140 Hb_003018_140--Hb_001357_140 Hb_183612_100 Hb_183612_100 Hb_003747_030--Hb_183612_100 Hb_001157_030 Hb_001157_030 Hb_003747_030--Hb_001157_030 Hb_002890_280 Hb_002890_280 Hb_003747_030--Hb_002890_280 Hb_000056_100 Hb_000056_100 Hb_003747_030--Hb_000056_100 Hb_003025_090 Hb_003025_090 Hb_003747_030--Hb_003025_090 Hb_000412_110--Hb_000676_220 Hb_000418_180 Hb_000418_180 Hb_000412_110--Hb_000418_180 Hb_023386_080 Hb_023386_080 Hb_000412_110--Hb_023386_080 Hb_000412_110--Hb_000329_040 Hb_000041_080 Hb_000041_080 Hb_000412_110--Hb_000041_080 Hb_002529_100 Hb_002529_100 Hb_000412_110--Hb_002529_100 Hb_000329_040--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000329_040--Hb_011794_070 Hb_000329_040--Hb_023386_080 Hb_000376_050 Hb_000376_050 Hb_000329_040--Hb_000376_050 Hb_000703_140 Hb_000703_140 Hb_000329_040--Hb_000703_140 Hb_004899_320 Hb_004899_320 Hb_000329_040--Hb_004899_320 Hb_000260_080--Hb_000703_140 Hb_000260_080--Hb_011794_070 Hb_000883_050 Hb_000883_050 Hb_000260_080--Hb_000883_050 Hb_000025_530 Hb_000025_530 Hb_000260_080--Hb_000025_530 Hb_000531_020 Hb_000531_020 Hb_000260_080--Hb_000531_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.0007 4.01648 9.06556 6.34466 25.6518 33.5697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.316 55.2644 42.1277 8.65686 10.9707

CAGE analysis