Hb_003018_140

Information

Type -
Description -
Location Contig3018: 69870-72365
Sequence    

Annotation

kegg
ID pxb:103966711
description endoglucanase 2-like
nr
ID XP_012065674.1
description PREDICTED: endoglucanase 24-like [Jatropha curcas]
swissprot
ID Q69SG5
description Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1
trembl
ID A0A067LQB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06512 PE=4 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31765: 71291-72104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_140 0.0 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
2 Hb_000018_190 0.1170345982 - - tocopherol cyclase [Hevea brasiliensis]
3 Hb_006120_200 0.1388188111 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
4 Hb_003777_180 0.1415654994 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
5 Hb_002043_180 0.1435650189 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
6 Hb_004286_040 0.1448015359 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
7 Hb_001357_140 0.147777392 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002253_070 0.1479763272 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
9 Hb_005883_030 0.1486975616 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
10 Hb_000676_220 0.1528503446 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_001157_030 0.1535813284 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
12 Hb_000446_090 0.1543500842 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
13 Hb_000412_110 0.1551464485 - - Rop4 [Hevea brasiliensis]
14 Hb_057183_040 0.1577824246 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
15 Hb_002681_020 0.1579138626 - - aldose 1-epimerase, putative [Ricinus communis]
16 Hb_000630_070 0.1603910539 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
17 Hb_001322_190 0.1609026048 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
18 Hb_002759_250 0.1625266278 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
19 Hb_001960_040 0.1632081091 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_000421_180 0.1641626064 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003018_140 Hb_003018_140 Hb_000018_190 Hb_000018_190 Hb_003018_140--Hb_000018_190 Hb_006120_200 Hb_006120_200 Hb_003018_140--Hb_006120_200 Hb_003777_180 Hb_003777_180 Hb_003018_140--Hb_003777_180 Hb_002043_180 Hb_002043_180 Hb_003018_140--Hb_002043_180 Hb_004286_040 Hb_004286_040 Hb_003018_140--Hb_004286_040 Hb_001357_140 Hb_001357_140 Hb_003018_140--Hb_001357_140 Hb_000018_190--Hb_003777_180 Hb_003747_030 Hb_003747_030 Hb_000018_190--Hb_003747_030 Hb_000412_110 Hb_000412_110 Hb_000018_190--Hb_000412_110 Hb_000329_040 Hb_000329_040 Hb_000018_190--Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_000018_190--Hb_000260_080 Hb_000762_020 Hb_000762_020 Hb_006120_200--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_006120_200--Hb_000481_020 Hb_001315_020 Hb_001315_020 Hb_006120_200--Hb_001315_020 Hb_006070_010 Hb_006070_010 Hb_006120_200--Hb_006070_010 Hb_002027_300 Hb_002027_300 Hb_006120_200--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_006120_200--Hb_000957_040 Hb_003777_180--Hb_000481_020 Hb_003777_180--Hb_000329_040 Hb_003777_180--Hb_000412_110 Hb_002681_020 Hb_002681_020 Hb_003777_180--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_003777_180--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_003777_180--Hb_006569_020 Hb_000768_050 Hb_000768_050 Hb_002043_180--Hb_000768_050 Hb_005883_030 Hb_005883_030 Hb_002043_180--Hb_005883_030 Hb_000000_080 Hb_000000_080 Hb_002043_180--Hb_000000_080 Hb_001158_040 Hb_001158_040 Hb_002043_180--Hb_001158_040 Hb_002272_250 Hb_002272_250 Hb_002043_180--Hb_002272_250 Hb_000265_150 Hb_000265_150 Hb_002043_180--Hb_000265_150 Hb_004286_040--Hb_006120_200 Hb_027380_040 Hb_027380_040 Hb_004286_040--Hb_027380_040 Hb_000120_240 Hb_000120_240 Hb_004286_040--Hb_000120_240 Hb_000956_130 Hb_000956_130 Hb_004286_040--Hb_000956_130 Hb_004286_040--Hb_002043_180 Hb_002027_220 Hb_002027_220 Hb_004286_040--Hb_002027_220 Hb_000421_180 Hb_000421_180 Hb_001357_140--Hb_000421_180 Hb_001357_180 Hb_001357_180 Hb_001357_140--Hb_001357_180 Hb_003787_020 Hb_003787_020 Hb_001357_140--Hb_003787_020 Hb_001960_040 Hb_001960_040 Hb_001357_140--Hb_001960_040 Hb_003376_040 Hb_003376_040 Hb_001357_140--Hb_003376_040 Hb_001671_080 Hb_001671_080 Hb_001357_140--Hb_001671_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22605 0.112154 0.111989 0.0939247 0.309839 0.424289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.673509 0.463656 0.665957 0.140838 0.278166

CAGE analysis