Hb_000041_080

Information

Type -
Description -
Location Contig41: 114760-117621
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10800g
description POPTRDRAFT_825512; hypothetical protein
nr
ID XP_012081403.1
description PREDICTED: universal stress protein A-like protein [Jatropha curcas]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID A0A067LLR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09578 PE=4 SV=1
Gene Ontology
ID GO:0005886
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40477: 114670-117628
cDNA
(Sanger)
(ID:Location)		 037_N04.ab1: 114664-115118 , 038_K03.ab1: 114670-117578

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_080 0.0 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
2 Hb_000412_110 0.0843959832 - - Rop4 [Hevea brasiliensis]
3 Hb_000023_230 0.0921900291 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
4 Hb_002529_100 0.0973905222 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
5 Hb_003540_040 0.0980793489 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
6 Hb_002681_020 0.0986685956 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_000676_220 0.099771624 - - ADP-ribosylation factor, putative [Ricinus communis]
8 Hb_002030_040 0.1009324652 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
9 Hb_004204_120 0.1010279822 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
10 Hb_006775_080 0.1015127562 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
11 Hb_000264_240 0.1027244576 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000127_010 0.1029222074 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
13 Hb_001776_110 0.1031217329 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
14 Hb_023226_040 0.1041669292 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
15 Hb_001257_080 0.1055807523 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003777_180 0.1064957025 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
17 Hb_044662_070 0.1066225902 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
18 Hb_000418_180 0.1067477301 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000500_130 0.108007194 - - small GTPase [Hevea brasiliensis]
20 Hb_004657_050 0.108978859 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]

Gene co-expression network

sample Hb_000041_080 Hb_000041_080 Hb_000412_110 Hb_000412_110 Hb_000041_080--Hb_000412_110 Hb_000023_230 Hb_000023_230 Hb_000041_080--Hb_000023_230 Hb_002529_100 Hb_002529_100 Hb_000041_080--Hb_002529_100 Hb_003540_040 Hb_003540_040 Hb_000041_080--Hb_003540_040 Hb_002681_020 Hb_002681_020 Hb_000041_080--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_000041_080--Hb_000676_220 Hb_000412_110--Hb_000676_220 Hb_000418_180 Hb_000418_180 Hb_000412_110--Hb_000418_180 Hb_023386_080 Hb_023386_080 Hb_000412_110--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000412_110--Hb_000329_040 Hb_000412_110--Hb_002529_100 Hb_023226_040 Hb_023226_040 Hb_000023_230--Hb_023226_040 Hb_001257_080 Hb_001257_080 Hb_000023_230--Hb_001257_080 Hb_003018_120 Hb_003018_120 Hb_000023_230--Hb_003018_120 Hb_000023_230--Hb_002529_100 Hb_004657_050 Hb_004657_050 Hb_000023_230--Hb_004657_050 Hb_004204_120 Hb_004204_120 Hb_000023_230--Hb_004204_120 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_000045_190 Hb_000045_190 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_001776_110 Hb_001776_110 Hb_003540_040--Hb_001776_110 Hb_125000_010 Hb_125000_010 Hb_003540_040--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_003540_040--Hb_022250_040 Hb_000392_270 Hb_000392_270 Hb_003540_040--Hb_000392_270 Hb_009711_030 Hb_009711_030 Hb_003540_040--Hb_009711_030 Hb_002097_110 Hb_002097_110 Hb_003540_040--Hb_002097_110 Hb_002681_020--Hb_001776_110 Hb_003052_100 Hb_003052_100 Hb_002681_020--Hb_003052_100 Hb_004812_010 Hb_004812_010 Hb_002681_020--Hb_004812_010 Hb_000665_040 Hb_000665_040 Hb_002681_020--Hb_000665_040 Hb_004310_030 Hb_004310_030 Hb_002681_020--Hb_004310_030 Hb_008554_020 Hb_008554_020 Hb_002681_020--Hb_008554_020 Hb_000676_220--Hb_000418_180 Hb_004223_130 Hb_004223_130 Hb_000676_220--Hb_004223_130 Hb_006824_020 Hb_006824_020 Hb_000676_220--Hb_006824_020 Hb_000107_390 Hb_000107_390 Hb_000676_220--Hb_000107_390 Hb_001671_080 Hb_001671_080 Hb_000676_220--Hb_001671_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
386.046 78.4924 112.019 91.6804 285.47 206.812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
533.218 343.385 249.423 66.8115 73.7227

CAGE analysis