Hb_000085_310

Information

Type -
Description -
Location Contig85: 290084-293460
Sequence    

Annotation

kegg
ID rcu:RCOM_0046300
description phosphoribosylamine-glycine ligase, putative (EC:2.1.2.2)
nr
ID KDP39217.1
description hypothetical protein JCGZ_00974 [Jatropha curcas]
swissprot
ID P52423
description Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Vigna unguiculata GN=PUR3 PE=2 SV=2
trembl
ID A0A067KSY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00974 PE=3 SV=1
Gene Ontology
ID GO:0004644
description phosphoribosylglycinamide chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_310 0.0 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
2 Hb_001366_220 0.0758855378 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004108_050 0.0807571496 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
4 Hb_000809_040 0.0848329556 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
5 Hb_001366_230 0.0899194681 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002662_100 0.0913133381 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
7 Hb_005357_150 0.0915233407 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_026988_020 0.0923351794 - - outward rectifying K+ channel [Hevea brasiliensis]
9 Hb_000072_280 0.0975512162 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
10 Hb_006824_020 0.0978128759 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
11 Hb_010638_020 0.0978757833 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
12 Hb_021068_050 0.0986635941 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
13 Hb_000956_010 0.0998239935 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
14 Hb_001981_090 0.1002233571 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
15 Hb_000376_050 0.1006340782 - - polyadenylate-binding protein, putative [Ricinus communis]
16 Hb_001439_120 0.1030008596 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000313_380 0.1035462854 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004882_020 0.1035893646 - - -
19 Hb_011224_080 0.1072560684 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
20 Hb_027472_180 0.108839598 - - hypothetical protein L484_016229 [Morus notabilis]

Gene co-expression network

sample Hb_000085_310 Hb_000085_310 Hb_001366_220 Hb_001366_220 Hb_000085_310--Hb_001366_220 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000809_040 Hb_000809_040 Hb_000085_310--Hb_000809_040 Hb_001366_230 Hb_001366_230 Hb_000085_310--Hb_001366_230 Hb_002662_100 Hb_002662_100 Hb_000085_310--Hb_002662_100 Hb_005357_150 Hb_005357_150 Hb_000085_310--Hb_005357_150 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_001981_090 Hb_001981_090 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_004108_050--Hb_005357_150 Hb_026988_020 Hb_026988_020 Hb_004108_050--Hb_026988_020 Hb_027472_180 Hb_027472_180 Hb_004108_050--Hb_027472_180 Hb_023386_080 Hb_023386_080 Hb_004108_050--Hb_023386_080 Hb_003151_050 Hb_003151_050 Hb_004108_050--Hb_003151_050 Hb_000809_040--Hb_000313_380 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_001366_230--Hb_026988_020 Hb_002662_100--Hb_000313_380 Hb_002662_100--Hb_001366_220 Hb_002662_100--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002662_100--Hb_009026_050 Hb_002662_100--Hb_001366_230 Hb_005357_150--Hb_001981_090 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_004800_160 Hb_004800_160 Hb_005357_150--Hb_004800_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1676 5.41605 2.5281 3.27903 37.5664 22.7706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.7927 33.5639 35.5157 10.0886 4.18587

CAGE analysis