Hb_002662_100

Information

Type -
Description -
Location Contig2662: 93222-96578
Sequence    

Annotation

kegg
ID rcu:RCOM_1589530
description hypothetical protein
nr
ID XP_012068303.1
description PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16104 PE=4 SV=1
Gene Ontology
ID GO:0006457
description PREDICTED: uncharacterized protein LOC105630921

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27816: 93261-96380
cDNA
(Sanger)
(ID:Location)		 006_L13.ab1: 93434-96251 , 011_A15.ab1: 93435-96331 , 036_P23.ab1: 93435-96182 , 038_C03.ab1: 93434-96283

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002662_100 0.0 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
2 Hb_000313_380 0.0805456618 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001366_220 0.0826264402 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000085_310 0.0913133381 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
5 Hb_000809_040 0.0984801351 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
6 Hb_009026_050 0.1053475751 - - vacuolar ATPase F subunit [Hevea brasiliensis]
7 Hb_001366_230 0.1105353779 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011174_070 0.1121061586 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
9 Hb_000923_070 0.1128233367 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005078_040 0.1136756108 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
11 Hb_021068_050 0.1145497265 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
12 Hb_000956_010 0.1145911621 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
13 Hb_002207_100 0.1154328982 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
14 Hb_000805_090 0.1157551813 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
15 Hb_000376_050 0.116037358 - - polyadenylate-binding protein, putative [Ricinus communis]
16 Hb_000771_140 0.1176512882 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
17 Hb_003638_030 0.118088671 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
18 Hb_011224_080 0.1188351615 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
19 Hb_000983_100 0.1204100346 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
20 Hb_000831_060 0.1208418329 - - 17.5 kd heat shock family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002662_100 Hb_002662_100 Hb_000313_380 Hb_000313_380 Hb_002662_100--Hb_000313_380 Hb_001366_220 Hb_001366_220 Hb_002662_100--Hb_001366_220 Hb_000085_310 Hb_000085_310 Hb_002662_100--Hb_000085_310 Hb_000809_040 Hb_000809_040 Hb_002662_100--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002662_100--Hb_009026_050 Hb_001366_230 Hb_001366_230 Hb_002662_100--Hb_001366_230 Hb_000313_380--Hb_000809_040 Hb_000313_380--Hb_001366_230 Hb_000313_380--Hb_001366_220 Hb_000313_380--Hb_009026_050 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050 Hb_001366_220--Hb_000809_040 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_001366_220--Hb_000085_310 Hb_001981_090 Hb_001981_090 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000085_310--Hb_000809_040 Hb_000085_310--Hb_001366_230 Hb_005357_150 Hb_005357_150 Hb_000085_310--Hb_005357_150 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_000089_130 Hb_000089_130 Hb_009026_050--Hb_000089_130 Hb_025087_010 Hb_025087_010 Hb_009026_050--Hb_025087_010 Hb_009026_050--Hb_001366_230 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_183963_020 Hb_183963_020 Hb_009026_050--Hb_183963_020 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_001366_230--Hb_025087_010 Hb_001366_230--Hb_183963_020 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.653 60.1367 9.37189 17.8619 251.911 218.983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
221.583 240.937 247.161 33.9907 25.9104

CAGE analysis