Hb_008376_010

Information

Type -
Description -
Location Contig8376: 18310-22542
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008376_010 0.0 - - -
2 Hb_019973_030 0.165662505 - - -
3 Hb_000014_100 0.1728310777 - - -
4 Hb_003125_050 0.174627349 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
5 Hb_019153_040 0.1756449127 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
6 Hb_000958_010 0.1772486612 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001514_190 0.1796435195 - - -
8 Hb_155123_010 0.1800921407 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_005657_010 0.1812702474 - - -
10 Hb_011716_040 0.1827067456 - - -
11 Hb_114684_020 0.1830085289 - - beta-1,3-glucanase [Hevea brasiliensis]
12 Hb_003747_240 0.1831058345 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
13 Hb_002391_230 0.1854590798 - - hypothetical protein RCOM_0745080 [Ricinus communis]
14 Hb_007245_090 0.1860202422 - - -
15 Hb_011671_330 0.188675434 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
16 Hb_018133_120 0.1888747103 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
17 Hb_000193_250 0.1893202631 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
18 Hb_004116_200 0.1917527685 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
19 Hb_001767_010 0.1946107782 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
20 Hb_011174_070 0.1970998687 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]

Gene co-expression network

sample Hb_008376_010 Hb_008376_010 Hb_019973_030 Hb_019973_030 Hb_008376_010--Hb_019973_030 Hb_000014_100 Hb_000014_100 Hb_008376_010--Hb_000014_100 Hb_003125_050 Hb_003125_050 Hb_008376_010--Hb_003125_050 Hb_019153_040 Hb_019153_040 Hb_008376_010--Hb_019153_040 Hb_000958_010 Hb_000958_010 Hb_008376_010--Hb_000958_010 Hb_001514_190 Hb_001514_190 Hb_008376_010--Hb_001514_190 Hb_001452_140 Hb_001452_140 Hb_019973_030--Hb_001452_140 Hb_004226_020 Hb_004226_020 Hb_019973_030--Hb_004226_020 Hb_007245_090 Hb_007245_090 Hb_019973_030--Hb_007245_090 Hb_019973_030--Hb_000014_100 Hb_001930_070 Hb_001930_070 Hb_019973_030--Hb_001930_070 Hb_000014_100--Hb_007245_090 Hb_006499_010 Hb_006499_010 Hb_000014_100--Hb_006499_010 Hb_000014_100--Hb_001930_070 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_011716_040 Hb_011716_040 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030 Hb_000300_530 Hb_000300_530 Hb_003125_050--Hb_000300_530 Hb_000249_110 Hb_000249_110 Hb_003125_050--Hb_000249_110 Hb_023610_010 Hb_023610_010 Hb_003125_050--Hb_023610_010 Hb_005657_010 Hb_005657_010 Hb_003125_050--Hb_005657_010 Hb_003906_120 Hb_003906_120 Hb_003125_050--Hb_003906_120 Hb_001767_010 Hb_001767_010 Hb_003125_050--Hb_001767_010 Hb_164732_010 Hb_164732_010 Hb_019153_040--Hb_164732_010 Hb_002983_020 Hb_002983_020 Hb_019153_040--Hb_002983_020 Hb_004032_240 Hb_004032_240 Hb_019153_040--Hb_004032_240 Hb_009680_030 Hb_009680_030 Hb_019153_040--Hb_009680_030 Hb_010931_110 Hb_010931_110 Hb_019153_040--Hb_010931_110 Hb_008453_020 Hb_008453_020 Hb_000958_010--Hb_008453_020 Hb_001514_200 Hb_001514_200 Hb_000958_010--Hb_001514_200 Hb_000958_010--Hb_004032_240 Hb_000117_040 Hb_000117_040 Hb_000958_010--Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000958_010--Hb_011609_190 Hb_002200_110 Hb_002200_110 Hb_000958_010--Hb_002200_110 Hb_000123_110 Hb_000123_110 Hb_001514_190--Hb_000123_110 Hb_001514_190--Hb_001930_070 Hb_001514_190--Hb_006499_010 Hb_031403_010 Hb_031403_010 Hb_001514_190--Hb_031403_010 Hb_001514_190--Hb_007245_090 Hb_001514_190--Hb_000014_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.508528 0.185939 0 0 1.07422 0.377666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.390243 0.362813 0.835173 0.368218 0.0580992

CAGE analysis