Hb_000300_530

Information

Type -
Description -
Location Contig300: 503267-505456
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012487980.1
description PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31615: 503282-505710
cDNA
(Sanger)
(ID:Location)		 023_M03.ab1: 504505-505710 , 031_D03.ab1: 504060-504738 , 035_C06.ab1: 504204-504457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_530 0.0 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
2 Hb_098315_110 0.0817057896 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003125_050 0.1116728275 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
4 Hb_023610_010 0.1131262934 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012654_020 0.1177940311 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011021_030 0.1180199653 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
7 Hb_154381_050 0.1182862655 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002172_030 0.1188922734 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
9 Hb_000050_120 0.1222696806 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
10 Hb_002078_040 0.1224844372 - - protein with unknown function [Ricinus communis]
11 Hb_001268_230 0.1227362407 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
12 Hb_006029_010 0.1240643395 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
13 Hb_004156_060 0.1243289667 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
14 Hb_011609_190 0.1255239681 - - 14-3-3 protein 2 [Hevea brasiliensis]
15 Hb_005410_010 0.1279386691 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
16 Hb_004648_040 0.1291923377 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
17 Hb_000491_080 0.1302525872 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
18 Hb_003906_120 0.1321990215 - - -
19 Hb_000208_290 0.1327360398 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
20 Hb_000005_050 0.1357437614 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_530 Hb_000300_530 Hb_098315_110 Hb_098315_110 Hb_000300_530--Hb_098315_110 Hb_003125_050 Hb_003125_050 Hb_000300_530--Hb_003125_050 Hb_023610_010 Hb_023610_010 Hb_000300_530--Hb_023610_010 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_011021_030 Hb_011021_030 Hb_000300_530--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000300_530--Hb_154381_050 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_000249_110 Hb_000249_110 Hb_003125_050--Hb_000249_110 Hb_003125_050--Hb_023610_010 Hb_005657_010 Hb_005657_010 Hb_003125_050--Hb_005657_010 Hb_003906_120 Hb_003906_120 Hb_003125_050--Hb_003906_120 Hb_001767_010 Hb_001767_010 Hb_003125_050--Hb_001767_010 Hb_004884_060 Hb_004884_060 Hb_023610_010--Hb_004884_060 Hb_023610_010--Hb_098315_110 Hb_095397_010 Hb_095397_010 Hb_023610_010--Hb_095397_010 Hb_004156_060 Hb_004156_060 Hb_023610_010--Hb_004156_060 Hb_002172_030 Hb_002172_030 Hb_012654_020--Hb_002172_030 Hb_005410_010 Hb_005410_010 Hb_012654_020--Hb_005410_010 Hb_011609_190 Hb_011609_190 Hb_012654_020--Hb_011609_190 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_000050_120 Hb_000050_120 Hb_012654_020--Hb_000050_120 Hb_000005_050 Hb_000005_050 Hb_011021_030--Hb_000005_050 Hb_011021_030--Hb_000050_120 Hb_011021_030--Hb_002172_030 Hb_011021_030--Hb_012654_020 Hb_003656_030 Hb_003656_030 Hb_011021_030--Hb_003656_030 Hb_011021_030--Hb_002078_040 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_154381_050--Hb_005410_010 Hb_154381_050--Hb_002172_030 Hb_154381_050--Hb_006029_010 Hb_154381_050--Hb_012654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
705.061 79.705 11.7903 36.7987 1162.39 599.798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
275.802 173.594 530.501 73.789 35.916

CAGE analysis