Hb_098315_110

Information

Type -
Description -
Location Contig98315: 87036-87797
Sequence    

Annotation

kegg
ID rcu:RCOM_0867390
description hypothetical protein
nr
ID XP_002519924.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Q9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0867390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 027_C01.ab1: 87090-87669

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098315_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000300_530 0.0817057896 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
3 Hb_001268_230 0.1034240089 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_004648_040 0.1057373741 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
5 Hb_000317_080 0.1070620271 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
6 Hb_130177_010 0.1090200623 - - hypothetical protein RCOM_0897890 [Ricinus communis]
7 Hb_006029_010 0.1158193745 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
8 Hb_154381_050 0.1242294559 - - conserved hypothetical protein [Ricinus communis]
9 Hb_053543_010 0.1243971237 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000176_170 0.1257514292 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
11 Hb_004156_060 0.1323746084 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
12 Hb_043959_010 0.1337476706 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
13 Hb_002172_030 0.1371157599 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
14 Hb_000395_140 0.1373072417 - - Oligopeptide transporter, putative [Ricinus communis]
15 Hb_002078_040 0.1388511053 - - protein with unknown function [Ricinus communis]
16 Hb_000050_120 0.1423662234 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
17 Hb_023610_010 0.1430088868 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000331_610 0.1435421363 - - hypothetical protein B456_003G108600 [Gossypium raimondii]
19 Hb_000987_050 0.1445934566 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
20 Hb_011021_030 0.1452944854 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]

Gene co-expression network

sample Hb_098315_110 Hb_098315_110 Hb_000300_530 Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_003125_050 Hb_003125_050 Hb_000300_530--Hb_003125_050 Hb_023610_010 Hb_023610_010 Hb_000300_530--Hb_023610_010 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_011021_030 Hb_011021_030 Hb_000300_530--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000300_530--Hb_154381_050 Hb_001268_230--Hb_004648_040 Hb_001268_230--Hb_000317_080 Hb_001628_110 Hb_001628_110 Hb_001268_230--Hb_001628_110 Hb_053543_010 Hb_053543_010 Hb_001268_230--Hb_053543_010 Hb_001268_230--Hb_000300_530 Hb_004648_040--Hb_011021_030 Hb_004648_040--Hb_000317_080 Hb_004648_040--Hb_000300_530 Hb_000988_050 Hb_000988_050 Hb_004648_040--Hb_000988_050 Hb_000317_080--Hb_053543_010 Hb_000987_050 Hb_000987_050 Hb_000317_080--Hb_000987_050 Hb_000317_080--Hb_001628_110 Hb_010931_110 Hb_010931_110 Hb_130177_010--Hb_010931_110 Hb_130177_010--Hb_006029_010 Hb_000300_540 Hb_000300_540 Hb_130177_010--Hb_000300_540 Hb_010368_070 Hb_010368_070 Hb_130177_010--Hb_010368_070 Hb_130177_010--Hb_000987_050 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.1411 9.85583 6.42774 11.6053 192.963 83.6729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4033 21.0663 65.766 12.1239 4.52419

CAGE analysis