Hb_004648_040

Information

Type -
Description -
Location Contig4648: 33985-34464
Sequence    

Annotation

kegg
ID rcu:RCOM_1613720
description hypothetical protein
nr
ID XP_012083491.1
description PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RDK1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1613720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004648_040 0.0 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
2 Hb_001268_230 0.0871231111 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_098315_110 0.1057373741 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011021_030 0.1250534028 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
5 Hb_000317_080 0.1274715715 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
6 Hb_000300_530 0.1291923377 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
7 Hb_000988_050 0.1336015329 - - conserved hypothetical protein [Ricinus communis]
8 Hb_154381_050 0.1444338574 - - conserved hypothetical protein [Ricinus communis]
9 Hb_053543_010 0.1460397332 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005410_010 0.1505236643 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
11 Hb_000210_130 0.1535492704 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
12 Hb_000050_120 0.153751496 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
13 Hb_002078_040 0.1559683204 - - protein with unknown function [Ricinus communis]
14 Hb_000176_170 0.1564522185 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
15 Hb_001628_110 0.1579887885 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
16 Hb_002172_030 0.1659207321 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
17 Hb_043959_010 0.1668356075 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
18 Hb_012654_020 0.1695151304 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007111_040 0.1698373001 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
20 Hb_006029_010 0.1721521712 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_004648_040 Hb_004648_040 Hb_001268_230 Hb_001268_230 Hb_004648_040--Hb_001268_230 Hb_098315_110 Hb_098315_110 Hb_004648_040--Hb_098315_110 Hb_011021_030 Hb_011021_030 Hb_004648_040--Hb_011021_030 Hb_000317_080 Hb_000317_080 Hb_004648_040--Hb_000317_080 Hb_000300_530 Hb_000300_530 Hb_004648_040--Hb_000300_530 Hb_000988_050 Hb_000988_050 Hb_004648_040--Hb_000988_050 Hb_001268_230--Hb_098315_110 Hb_001268_230--Hb_000317_080 Hb_001628_110 Hb_001628_110 Hb_001268_230--Hb_001628_110 Hb_053543_010 Hb_053543_010 Hb_001268_230--Hb_053543_010 Hb_001268_230--Hb_000300_530 Hb_098315_110--Hb_000300_530 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_000005_050 Hb_000005_050 Hb_011021_030--Hb_000005_050 Hb_000050_120 Hb_000050_120 Hb_011021_030--Hb_000050_120 Hb_002172_030 Hb_002172_030 Hb_011021_030--Hb_002172_030 Hb_012654_020 Hb_012654_020 Hb_011021_030--Hb_012654_020 Hb_003656_030 Hb_003656_030 Hb_011021_030--Hb_003656_030 Hb_002078_040 Hb_002078_040 Hb_011021_030--Hb_002078_040 Hb_000317_080--Hb_053543_010 Hb_000987_050 Hb_000987_050 Hb_000317_080--Hb_000987_050 Hb_000317_080--Hb_001628_110 Hb_003125_050 Hb_003125_050 Hb_000300_530--Hb_003125_050 Hb_023610_010 Hb_023610_010 Hb_000300_530--Hb_023610_010 Hb_000300_530--Hb_012654_020 Hb_000300_530--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000300_530--Hb_154381_050 Hb_000208_240 Hb_000208_240 Hb_000988_050--Hb_000208_240 Hb_005488_070 Hb_005488_070 Hb_000988_050--Hb_005488_070 Hb_000988_050--Hb_003656_030 Hb_000988_050--Hb_011021_030 Hb_000988_050--Hb_154381_050 Hb_007111_040 Hb_007111_040 Hb_000988_050--Hb_007111_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.51711 0.656742 0.141768 1.06368 14.6871 8.20795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87284 1.01554 3.97955 0.329692 0.417928

CAGE analysis